Sequence
atgc intronic sequence ATGC exonic sequenceTTTTCATGACAGGAATATCGTATCAACAGTTAATTTGGATTGTAAACTTGACCTCAAAGCAATAGCTTTGCAAGCACGAAATGCGGAGTATAACCCAAAGgtatactgattatctcaaagcaatggctttgtacggtatttcctggtggttgtatctagcatatgatttcatggatatacaacacatgttgatccttttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G161418_T06 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g39070.1 (Oryza sativa), 5'ss of exon 2
TTTTCATGACAGGAATATCGTATCAACAGTTAATTTGGATTGTAAACTTGACCTCAAAGCAATAGCTTTGCAAGCACGAAATGCGGAGTATAACCCAAAGgtatactgattatctcaaagcaatggctttgtacggtatttcctggtggttgtatctagcatatgatttcatggatatacaacacatgttgatccttttt----
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------------AAACATCGTGTCGACGGTCAATTTGGATTGCAAATTAGACCTCAAAGCTATAGCTTTGCAAGCACGCAATGCAGAATATAATCCAAAGgtattatgatggctttggtgtgttcttgtgtctttgattttgctcgaaaggatatcttctttgca----tgtgaaaattttacctattttaatcctgctagcat
upper sequence: GRMZM2G161418_T06 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g45410.1 (Oryza sativa), 5'ss of exon 2
TTTTCATGACAGGAATATCGTATCAACAGTTAATTTGGATTGTAAACTTGACCTCAAAGCAATAGCTTTGCAAGCACGAAATGCGGAGTATAACCCAAAGgtatactgattatctcaaagcaatggctttgtacggtatttcctggtggttgtatctagcatatgatttcatggatatacaacacatgttgatccttttt----
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------------AAACATCGTATCGACGGTCAATTTGGATTGCAAATTAGACCTCAAAGCTATAGCTTTGCAAGCTCGCAATGCAGAATATAATCCAAAGgtattatgatggcttcggtgtgttctagtgtctctgttttggctcaaaaggatatctt-cattgcatgttaaaatgatacca---atgttattcttagtagcatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67021248|gb|CO449997.1|CO449997EST: ACCTCAAAGCAATAGCTTTGCAAGCACGAAATGCGGAGTATAACCCANAG CGTTTTGCTGCAGTCATCATGAAGA-TAAGAGAACCCANA-CCACAGCACT
genomic: ACCTCAAAGCAATAGCTTTGCAAGCACGAAATGCGGAGTATAACCCAAAGgtatactgat ... ctgtaaacagCGTTTTGCTGCAGTCATCATGA-GAATAAGAGAACCCAAAACCACAGCACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTCATGACAGGAATATCGTATCAACAGTTAATTTGGATTGTAAACTTGACCTCAAAGCAATAGCTTTGCAAGCACGAAATGCGGAGTATAACCCAAAGgtatactgattatctcaaagcaatggctttgtacggtatttcctggtggttgtatctagcatatgatttcatggatatacaacacatgttgatccttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA