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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGAAGAGCGGAGTTCCATGGTTCTGGATTGATTGGATCCTTCCGAACAATCTATCGGACAGAAGGTCTTTTAGGGTTTTACAGgtttgcctcttcctaatttgcgtgacaaatggtagtctattaataaatgatgcactcttgagcttgacttcttaattgtctttctttag

Basic information

species Zea mays
transcript GRMZM2G161299_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161299_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g13300.2 (Oryza sativa), 5'ss of exon 2
ACAAGAAGAGCGGAGTTCCATGGTTCTGGATTGATTGGATCCTTCCGAACAATCTATCGGACAGAAGGTCTTTTAGGGTTTTACAGgtttgcctcttcctaatttgcgtgacaaatggtagtctattaataaatgatgcactcttgagcttgacttcttaattgtctttctttag
|| |||||||| || ||||||||||||||||| |||||||| || |||||||||| ||| |||||||| |||||||||||||||||||| | || | |||  |||||       ||  |        ||| |    |||||| |||||||||||||   |||   ||| | ||||
ACTAGAAGAGCAGAATTCCATGGTTCTGGATTAATTGGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAGGGTTTTACAGgttggtct-tgcctgctttgctacttgcataatg-------aatgacaattgcactgttgagcttgactttggaat---cttcccttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211359789|gb|FL457496.1|FL457496
EST:     GGATCCTTCCGAACAATCTATCGGACAGAAGGTCTTTTAGGGTTTTACAG                         GGGAAATGGAGCTAGTGTTGCTCGAATTGTCCCGTA
genomic: GGATCCTTCCGAACAATCTATCGGACAGAAGGTCTTTTAGGGTTTTACAGgtttgcctct ... ctttctttagGGGAAATGGAGCTAGTGTTGCTCGAATTGTCCCGTA
EST: gi|211538575|gb|FL022784.1|FL022784
EST:     GGATCCTTCCGAACAATCTATCGGACAGAAGGTCTYTTAGGGTTTTACAG                         GGGAAATGGAGC
genomic: GGATCCTTCCGAACAATCTATCGGACAGAAGGTCTTTTAGGGTTTTACAGgtttgcctct ... ctttctttagGGGAAATGGAGC
EST: gi|38687749|gb|CK144780.1|CK144780
EST:     GGATCCTTCCGAACAATCTATCGGACAGAAGGTCTTTTAGGGTTTTACAG                         GGGAAATGGAGCTAGTGTTGCTCGAATTGTCCCGTATGCAGCTTTGCATTA
genomic: GGATCCTTCCGAACAATCTATCGGACAGAAGGTCTTTTAGGGTTTTACAGgtttgcctct ... ctttctttagGGGAAATGGAGCTAGTGTTGCTCGAATTGTCCCGTATGCAGCTTTGCATTA
EST: gi|211538580|gb|FL022789.1|FL022789
EST:     GGATCCTTCCGAACAATCTATCGGACAGAAGGTCTTTTAGGGTTTTACAG                         GGGAAATGGAGCTAGTGTTGCTCGAATTGTCCCGTATGCAGCTTTGCATTA
genomic: GGATCCTTCCGAACAATCTATCGGACAGAAGGTCTTTTAGGGTTTTACAGgtttgcctct ... ctttctttagGGGAAATGGAGCTAGTGTTGCTCGAATTGTCCCGTATGCAGCTTTGCATTA
EST: gi|76294060|gb|DV033628.1|DV033628
EST:     GGATCCTTCCGAACAATCTATCGGACAGAAGGTCTTTTAGGGTTTTACAG                         GGGAAATGGAGCTAGTGTTGCTCGAATTGTCCCGTATGCAGCTTTGCATTA
genomic: GGATCCTTCCGAACAATCTATCGGACAGAAGGTCTTTTAGGGTTTTACAGgtttgcctct ... ctttctttagGGGAAATGGAGCTAGTGTTGCTCGAATTGTCCCGTATGCAGCTTTGCATTA