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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACATCAGTCTGACAGAGAAGAATTCTTGAAGCTCTGCAGGAGGGTTGAGTACACCATAAGGGCTTGGTACCATCTCCAGTTTGATGATATGATGgtgaggaaagtttattatccatacaaaaagcagtgtttattggcttgaattcatgctcacaagtcacaaccatcaaccatctccatagtttccggtgtttcaatgatacttgatctattcaagctggtacttttgcag

Basic information

species Zea mays
transcript GRMZM2G161168_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161168_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g70390.1 (Oryza sativa), 5'ss of exon 2
AACATCAGTCTGACAGAGAAGAATTCTTGAAGCTCTGCAGGAGGGTTGAGTACACCATAAGGGCTTGGTACCATCTCCAGTTTGATGATATGATGgtgaggaaagtttattatccatacaaaaagc--agtgtttattggcttgaattcatgctcac-----aagtcacaaccatcaaccatctcca-tagtttccgg---tgtttca--atgatacttgatctattcaagctggtac---ttttgcag
|||| || ||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||   || ||    ||  |||  ||  |    | |  ||    ||   || |||  |       |  | |  |||||||   |  ||   |  |||| ||   |||||||  |||  |  |||||| |   | ||| ||    ||   |||
AACAACAATCTGACAGAGAAGAATTCTTGAAGCTCTGCAAGAGGATTGAGTACACCATTAGGGCCTGGTATCATCTCCAGTTTGATGATATGATGgtgag---agcttgcattcgttactgaagtcctgttctccatacattttcttttatggacttgatggagcttatgaccatcattaagatctgctgatttctggcagtgtttcacaatgtgatctgatctgtcagaactgctataatttccacag

upper sequence: GRMZM2G161168_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G26360.1 (Glycine max), 5'ss of exon 2
AACATCAGTCTGACAGAGAAGAATTCTTGAAGCTCTGCAGGAGGGTTGAGTACACCATAAGGGCTTGGTACCATCTCCAGTTTGATGATATGATGgtgaggaaagtttattatccatacaaaaagcagtgtttattggcttgaattcatgctcacaagtcacaaccatcaaccatctccatagtttccggtgtttcaatgatacttgatctattcaagctggtacttttgcag
|||||    ||||| |||  ||||| ||||||||||||| |||  | ||||| |||||  | |||||||||| ||| |||||||| || ||||||||    |   ||| || | ||  ||    |   |    | | ||||       || | |  || |  |    |      | ||  |  |||   |||  | ||                                   
AACATAGTGCTGACCGAGTTGAATTTTTGAAGCTCTGCAAGAGAATAGAGTATACCATTCGAGCTTGGTACCTTCTACAGTTTGAGGACATGATGgt----attcttttttcttcac-cattttgtgataca-aatagcttagtgatgtggtta-gagcctgatttttt-----tttctttctttttttgtgccttaag----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71426968|gb|DR808018.1|DR808018
EST:     TTGAGTACACCATAAGGGCTTGGTACCATCTCCAGTTTGATGATATGATG                         GAACTGTTCGCTCTCTTCGATCCTGTGCATGGTGCTAAAAAACTCGAGCAG
genomic: TTGAGTACACCATAAGGGCTTGGTACCATCTCCAGTTTGATGATATGATGgtgaggaaag ... acttttgcagGAACTGTTCGCTCTCTTCGATCCTGTGCATGGTGCTAAAAAACTCGAGCAG
EST: gi|26557524|gb|CA829759.1|CA829759
EST:     GCTTGGTACCATCTCCAGTTTGATGATATGATG                         GAACTGTTCGCTCTCTTCGATCCTGTGCATGGTGCTAAAAAACTCGAGCAG
genomic: GCTTGGTACCATCTCCAGTTTGATGATATGATGgtgaggaaag ... acttttgcagGAACTGTTCGCTCTCTTCGATCCTGTGCATGGTGCTAAAAAACTCGAGCAG
EST: gi|93015466|gb|EB640986.1|EB640986
EST:     TTGAGTACACCATAAGGGCTTGGTACCATCTCCAGTTTGATGATATGATG                         GAACTGTTCGCTCTCTTCGATCCTGTGCATGGTGCTAAAAAACTCGAGCAG
genomic: TTGAGTACACCATAAGGGCTTGGTACCATCTCCAGTTTGATGATATGATGgtgaggaaag ... acttttgcagGAACTGTTCGCTCTCTTCGATCCTGTGCATGGTGCTAAAAAACTCGAGCAG