Sequence
atgc intronic sequence ATGC exonic sequenceTTCTCGGTGTTCGGCTCGCTGTCCAACGTGGGCGCCATGGTCGGGGCGATCGCCAGCGGCCAGATGGCCGAGTACGTTGGCCGCAAAGGGgtgagaaactctgttccttttcttcatttattactccttttttctccttgctgtaataacaaatgtgagatggccgagtacgtagagactagagagtagt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G160460_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g49270.1 (Oryza sativa), 5'ss of exon 2
TTCTCGGTGTTCGGCTCGCTGTCCAACGTGGGCGCCATGGTCGGGGCGATCGCCAGCGGCCAGATGGCCGAGTACGTTGGCCGCAAAGGGgtgagaaactctgttccttttcttcatttattactccttttttctccttgctgtaataacaaatgtgagatggccgagtacgtagagacta-gagagtagt
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TTCTCGGTGTTCGGATCGCTGTCCAACGTCGGCGCCATGGTTGGGGCGATTGCCAGTGGTCAGATGGCCGAGTACATTGGGCGCAAAGGGgtgagaattttttttctttttttgggtacac-atcgtatgcagttattagttgcgctttcgtagggttaccagtctctttctaaaggacaataatggtggt
upper sequence: GRMZM2G160460_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g49260.1 (Oryza sativa), 5'ss of exon 2
TTCTCGGTGTTCGGCTCGCTGTCCAACGTGGGCGCCATGGTCGGGGCGATCGCCAGCGGCCAGATGGCCGAGTACGTTGGCCGCAAAGGGgtgagaaactctgttccttttcttcatttattactccttttttct----ccttgctgtaataacaaatgtgagatggccgagtacgtagagactagagagtagt
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TTCTCGGCTTTCGGTTCGCTGTCCAACGTCGGCGCCATGGTCGGAGCGATCGCCAGTGGGCAGATGGCGGAGTACATTGGCCGGAAAGGGgtgagaatttgtgcttcatttggtccttatctgttcttccactagaaggccatcctgtatc--tcgacgacgaacaattga-tactttgatagttgacaa-ggt
upper sequence: GRMZM2G160460_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA14G08070.1 (Glycine max), 5'ss of exon 3
TTCTCGGTGTTCGGCTCGCTGTCCAACGTGGGCGCCATGGTCGGGGCGATCGCCAGCGGCCAGATGGCCGAGTACGTTGGCCGCAAAGGGgtgagaaactctgttccttttctt-catttattactccttttttctccttgctgtaataac-aaatgtgagatggccgagtacgtaga--gactagagagtagt----------------------
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TTTTCTTTGTTTGGTTCTTTGTCCAATGTGGGTGCCATGGTTGGAGCAATAGCCAGTGGTCAGATTGCCGAGTACATAGGGCGCAAAGGGgtacccttttttctcttttttcgtgtgtttatgtgtatgcttttcctttaatttcaatatttgagtttgagggatgaggctaattcaattggtcaacgggttacaatttcttgtctgaaattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211032760|gb|FL421272.1|FL421272EST: TCGGGGCGATCGCCAGTGGCCAGATGGCCGAGTACGTTGGCCGCAAAGGG TCGTTGATGATTGCAG
genomic: TCGGGGCGATCGCCAGCGGCCAGATGGCCGAGTACGTTGGCCGCAAAGGGgtgagaaact ... tattttgcagTCGTTGATGATTGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTCGGTGTTCGGCTCGCTGTCCAACGTGGGCGCCATGGTCGGGGCGATCGCCAGCGGCCAGATGGCCGAGTACGTTGGCCGCAAAGGGgtgagaaactctgttccttttcttcatttattactccttttttctccttgctgtaataacaaatgtgagatggccgagtacgtagagactagagagtagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG