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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAGCGCTGCGTACGTTCACTTGAAACAAGCAGAGATTTCCAAGTACACCAGGAATCTTGCTCCCGCCAGTCGTGCAATCCTGCTGTCAGGTCCCGCAGgtacattgtcatcttccgcttgtattggcactcctctcagccaatttgtttctgcttcactgaactaagactcaatgtcctgtcttgaag

Basic information

species Zea mays
transcript GRMZM2G159307_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159307_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g12660.1 (Oryza sativa), 5'ss of exon 2
ACCAGCGCTGCGTACGTTCACTTGAAACAAGCAGAGATTTCCAAGTACACCAGGAATCTTGCTCCCGCCAGTCGTGCAATCCTGCTGTCAGGTCCCGCAGgtacattgtcatcttccgcttgtattggcactcctctcagccaatttgtttctg--cttcactgaactaagac---tcaatgtcctgtcttgaag
|| ||||| ||||| ||||||||||| |||||||| || ||  | ||||||||||||||||| || || || ||||| || ||  ||||||| || ||||||| ||  |  ||    ||     ||         || |  || | |  |||||  | | ||| |  |||| |   | ||  |||| ||||||||
ACAAGCGCGGCGTATGTTCACTTGAAGCAAGCAGACATCTCACAATACACCAGGAATCTTGCACCAGCTAGCCGTGCGATTCTATTGTCAGGCCCTGCAGgtaaatcatattccattgcacaggttaaggagttgctgaatcactcttcttctggccctgactaagttaaggctaattaagttcctatcttgaag