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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGTTGCAGAGGTTCAATTACCAGCAGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAGgtatattgcaataaacagtacattgttggatgtttcaatggaaatctttggtcacctattgcttgcattattttttcatgtttcactactcttaaccatcattacattgttggcttaattcttgttgatctgactcctaattgcag

Basic information

species Zea mays
transcript GRMZM2G158237_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158237_T05 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g36670.1 (Oryza sativa), 5'ss of exon 2
GGCGTTGCAGAGGTTCAATTACCAGCAGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAGgtatattgcaata--aacagtacattgt----tggatgtttcaatggaaatctttggtcacctattgcttgcattattttttcatgtttcactactcttaaccatcattacattgttggcttaattcttgttgatctgactcctaattgcag
 || ||| |||||||| |||||| ||||||||| ||||||| ||| | ||||| ||||||||||| ||||| ||||||||||  | |||  | ||  ||| | |    |||||||| |||||||||   |     || | |||||||||   ||  |  |  | |||||   ||||| |       | | |||  | ||||||||||        | ||| ||| |||
AGCCTTGGAGAGGTTCGATTACCTGCAGTTACTAACAGGGTATACTTGGATGTGGAAATTGATGGGCAACATATAGgtatatcactatatcatcatgacaatctgtcttggatgttccaatggaaagaataaa--acttgttgcttgcaccgttactatacatgtcactcagcttaagc-------cctggttaacctaattcttgtgtgct---cccctcattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71427479|gb|DR808529.1|DR808529
EST:     AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAG                         GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
genomic: AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAGgtatattgca ... ctaattgcagGTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
EST: gi|76010741|gb|DT937911.1|DT937911
EST:     AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAG                         GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
genomic: AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAGgtatattgca ... ctaattgcagGTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
EST: gi|71448593|gb|DR829643.1|DR829643
EST:     AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAG                         GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
genomic: AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAGgtatattgca ... ctaattgcagGTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
EST: gi|71771559|gb|DR969496.1|DR969496
EST:     AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAG                         GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
genomic: AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAGgtatattgca ... ctaattgcagGTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
EST: gi|71434185|gb|DR815235.1|DR815235
EST:     AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAG                         GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
genomic: AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAGgtatattgca ... ctaattgcagGTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA