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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTCGCCAAGGCCATCGCCAGGGAGTCCGGCGCCGTCTTCATCAATGTCAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaattctattcttggtttatcctactactcttgccggtttggtgctaatccactggatatccgcctgttttggattcataacaattgtagtagac...

Basic information

species Zea mays
transcript GRMZM2G158136_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158136_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g50050.2 (Oryza sativa), 5'ss of exon 2
ATGCTCGCCAAGGCCATCGCCAGGGAGTCCGGCGCCGTCTTCATCAATGTCAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaattctattcttggtttatcctactactcttgccggtttggtgctaatccactggatatccgcctgttttggattcataacaattgtagtagac
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| ||| |||   ||    |     |  | |   |   || |||| |    |  | ||    | | | |   |  | |   |||| || | |  | | | ||  
ATGCTCGCCAAGGCCATCGCCAAGGAGTCAGGCGCCGTCTTCATCAATGTCAGGATTTCCAACCTCATGAGCAAGTGGTTCGGCGACGCCCAGAAGCTCGgtcagc---tccgcgcgcaaatccttcggtttaact-gccgctcc--ttttcatttgtttgttgttatc--gctgctgatttatgaaacatcttgcag--

upper sequence: GRMZM2G158136_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ08867 (Selaginella moellendorffii), 5'ss of exon 2
ATGCTCGCCAAGGCCATCGCCAGGGAGTCCGGCGCCGTCTTCATCAATGTCAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaattctattcttggtttatcctactactcttgccggtttggtgctaatccactggatatccgcctgttttggattcataacaattgtagtagac
 |||| |||||||| || |||| ||||||  | |||||||||||||| ||| ||||  ||| |||||||  |||||||||||| ||||| |||||||| ||| | |    || | ||    |   |   ||    | | | | |||  || || || |     |   | || || | | | ||                 
TTGCTGGCCAAGGCGATTGCCAAGGAGTCGCGAGCCGTCTTCATCAACGTCCGGATTGCCACTCTCATGTCCAAGTGGTTCGGAGACGCTCAGAAGCTCGgtaaac----ctctcctc--ctctcctcgctttcttcggctgcttgccgccaa-ccgcgtttcacttgactcttgttggtgcag----------------

upper sequence: GRMZM2G158136_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ11944 (Selaginella moellendorffii), 5'ss of exon 2
ATGCTCGCCAAGGCCATCGCCAGGGAGTCCGGCGCCGTCTTCATCAATGTCAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaattctattcttggtttatcctactactcttgccggtttggtgctaatccactggatatccgcctgttttggattcataacaattgtagtagac
 |||| |||||||| || |||| ||||||  | |||||||||||||| ||  ||||  ||| |||||||  |||||||||||| ||||| |||||||| ||| | |        |||     | ||||     |||||||      ||     | |||| ||     |   ||   |                       
TTGCTGGCCAAGGCGATTGCCAAGGAGTCGCGAGCCGTCTTCATCAACGTTCGGATTGCCACTCTCATGTCCAAGTGGTTCGGAGACGCCCAGAAGCTCGgtaaac-------ctctccccctctcctcgctttcttgccaaccgcgt-----ttcacttgactcttgttggtgcag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67030530|gb|CO459279.1|CO459279
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|149076529|gb|EE165156.2|EE165156
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTTATCTTC
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATT-ATCTTC
EST: gi|148961917|gb|EE012707.2|EE012707
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|78081860|gb|DV510272.1|DV510272
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|149105403|gb|EE290912.2|EE290912
EST:     CAGGATCTCCAATCTCATGAGCCAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCT
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|211461323|gb|FL283286.1|FL283286
EST:     CTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTTGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|148949884|gb|EC895380.2|EC895380
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|50334041|gb|CO529167.1|CO529167
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|74244276|gb|DT652190.1|DT652190
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|78121665|gb|DV540049.1|DV540049
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|93283899|gb|EB676163.1|EB676163
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|148954924|gb|EC900412.2|EC900412
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|149077190|gb|EE165854.2|EE165854
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|76923334|gb|DV169435.1|DV169435
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|78075677|gb|DV504111.1|DV504111
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|78115003|gb|DV533391.1|DV533391
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|71435533|gb|DR816583.1|DR816583
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|149089069|gb|EE178236.2|EE178236
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|101390734|gb|EB817301.1|EB817301
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCCCAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCCGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|31354032|gb|CD438389.1|CD438389
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|149097605|gb|EE183498.2|EE183498
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|71299646|gb|DR785831.1|DR785831
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|71435645|gb|DR816695.1|DR816695
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGCCTTTAGTCTCGCTCACAAGCTCCAG
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAG
EST: gi|148941166|gb|EC886045.2|EC886045
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|148961232|gb|EE011948.2|EE011948
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|93012345|gb|EB637865.1|EB637865
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|148940585|gb|EC885389.2|EC885389
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|148960540|gb|EE011147.2|EE011147
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|89762253|gb|DY689934.1|DY689934
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|149017489|gb|EE045689.2|EE045689
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: gi|148944282|gb|EC889378.2|EC889378
EST:     CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG                         TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 46 (downstream exon)
Score: 26

ATGCTCGCCAAGGCCATCGCCAGGGAGTCCGGCGCCGTCTTCATCAATGTCAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCATTGACGAGGTCGACAGTTTCTTGGGGCAGCGACGGACAACTGACCATGA


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 20

ATGCTCGCCAAGGCCATCGCCAGGGAGTCCGGCGCCGTCTTCATCAATGTCAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCATTGACGAGGTCGACAGTTTCTTGGGGCAGCGACGGACAACTGACCATGA


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 13

ATGCTCGCCAAGGCCATCGCCAGGGAGTCCGGCGCCGTCTTCATCAATGTCAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCATTGACGAGGTCGACAGTTTCTTGGGGCAGCGACGGACAACTGACCATGA


Block sizes: 44 (upstream exon), 22 (downstream exon)
Score: 11

ATGCTCGCCAAGGCCATCGCCAGGGAGTCCGGCGCCGTCTTCATCAATGTCAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCATTGACGAGGTCGACAGTTTCTTGGGGCAGCGACGGACAACTGACCATGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGCTCGCCAAGGCCATCGCCAGGGAGTCCGGCGCCGTCTTCATCAATGTCAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaattctattcttggtttatcctactactcttgccggtttggtgctaatccactggatatccgcctgttttggattcataacaattgtagtagac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC