Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCAATGCACTTTTTGGATGGCCTAGGGGGGACACGACAGCACGTGAACTGATCCCTCCTGCTGAATCCTATACGCTCTCAGGGTCAGCCTCAGAGGTgtttgtgtttcttgagtgaactcctttttgaggacctatgcacctaattcatgatttccttaatcactcgtttatttcag

Basic information

species Zea mays
transcript GRMZM2G158097_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158097_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g36062.1 (Oryza sativa), 5'ss of exon 2
--AGGTCAATGCACTTTTTGGATGGCCTAGGGGGGACACGACAGCACGTGAACTGATCCCTCCTGCTGAATCCTATACGCTCTCAGGGTCAGCCTCAGAGGTgtttgtgtttcttgagtgaactcctttttgaggacctatgcacctaattcatgatttc-cttaatcactcgtttatttcag
  |||| | |||| ||||||| |||  || ||| ||||| | | |||||||| ||| |||  |||||||||| ||||||||  |||||||||||||||||||||||      || | ||||||    |||  || || ||||||||| |||||||||||  | |||||| || ||  ||||||
AAAGGTTACTGCAATTTTTGGGTGGATTAAGGGAGACACAAGAACACGTGAATTGAACCCATCTGCTGAATCATATACGCTTACAGGGTCAGCCTCAGAGgtgttt------ctcgggtgaacattgtttcaagtacatatgcacctgattcatgatttttcctaatcattcattggtttcag

upper sequence: GRMZM2G158097_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g36062.2 (Oryza sativa), 5'ss of exon 2
---------------AGGTCAATGCACTTTTTGGATGGCCTAGGGGGGACACGACAGCACGTGAACTGATCCCTCCTGCTGAATCCTATACGCTCTCAGGGTCAGCCTCAGAGGTgtttgtgtttcttgagtgaactcctttttgaggacctatgcacctaattcatgatttc-cttaatcactcgtttatttcag----
               |||| | |||| ||||||| |||  || ||| ||||| | | |||||||| ||| |||  |||||||||| ||||||||  |||||||||||||||||||||||      || | ||||||    |||  || || ||||||||| |||||||||||  | |||||| || ||  ||||||    
CGGGATTGCAGTTAAAGGTTACTGCAATTTTTGGGTGGATTAAGGGAGACACAAGAACACGTGAATTGAACCCATCTGCTGAATCATATACGCTTACAGGgtcagcctcagaggtgttt------ctcgggtgaacattgtttcaagtacatatgcacctgattcatgatttttcctaatcattcattggtttcaggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71766887|gb|DR964824.1|DR964824
EST:     CTGATCCCTCCTGCTGAATCCTATACGCTCTCAGGGTCAGCCTCAGAGGT                         GTAGGTGCAAAACCACGTGAGGTGTCTATATCTGTTGCTTCTTCAATCATG
genomic: CTGATCCCTCCTGCTGAATCCTATACGCTCTCAGGGTCAGCCTCAGAGGTgtttgtgttt ... tttatttcagGTAGGTGCAAAACCACGTGAGGTGTCTATATCTGTTGCTTCTTCAATCATG
EST: gi|71318422|gb|DR795977.1|DR795977
EST:     CTGATCCCTCCTGCTGAATCCTATACGCTCTCAGGGTCAGCCTCAGA-G-                         GTAGGTGCAAAACCACGTGAGGTGTCTATATCTGTTGCTTCTTCAATCATG
genomic: CTGATCCCTCCTGCTGAATCCTATACGCTCTCAGGGTCAGCCTCAGAGGTgtttgtgttt ... tttatttcagGTAGGTGCAAAACCACGTGAGGTGTCTATATCTGTTGCTTCTTCAATCATG
EST: gi|89761707|gb|DY689615.1|DY689615
EST:     CTGATCCCTCCTGCTGAATCCTATACGCTCTCAGGGTCAGCCTCAGAGGT                         --AGGTGCAAAACCACGTGAGGTGTCTATATCTGTTGCTTCTTCAATCATG
genomic: CTGATCCCTCCTGCTGAATCCTATACGCTCTCAGGGTCAGCCTCAGAGGTgtttgtgttt ... tttatttcagGTAGGTGCAAAACCACGTGAGGTGTCTATATCTGTTGCTTCTTCAATCATG
EST: gi|91873363|gb|EB403320.1|EB403320
EST:     CTGATCCCTCCTGCTGAATCCTATACGCTCTCAGGGTCAGCCTCAGAGGT                         --AGGTGCAAAACCACGTGAGGTGTCTATATCTGTTGCTTCTTCAATCATG
genomic: CTGATCCCTCCTGCTGAATCCTATACGCTCTCAGGGTCAGCCTCAGAGGTgtttgtgttt ... tttatttcagGTAGGTGCAAAACCACGTGAGGTGTCTATATCTGTTGCTTCTTCAATCATG
EST: gi|50325272|gb|CO520398.1|CO520398
EST:     CTGATCCCTCCTGCTGAATCCTATACGCTCTCAGGGTCAGCCTCAGAGGT                         --AGGTGCAAAACCACGTGAGGTGTCTATATCTGTTGCTTCTTCAATCATG
genomic: CTGATCCCTCCTGCTGAATCCTATACGCTCTCAGGGTCAGCCTCAGAGGTgtttgtgttt ... tttatttcagGTAGGTGCAAAACCACGTGAGGTGTCTATATCTGTTGCTTCTTCAATCATG
EST: gi|76922721|gb|DV169140.1|DV169140
EST:     CTGATCCCTCCTGCTGAATCCTATACGCTCTCAGGGTCAGCCTCAGA-G-                         GTAGGTGCAAAACCACGTGAGGTGTCTATATCTGTTGCTTCTTCAATCATG
genomic: CTGATCCCTCCTGCTGAATCCTATACGCTCTCAGGGTCAGCCTCAGAGGTgtttgtgttt ... tttatttcagGTAGGTGCAAAACCACGTGAGGTGTCTATATCTGTTGCTTCTTCAATCATG