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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAAGACTCTAAATTCAGGCTCATTCTTGTGGAGAGCAGGATCCACCGCCTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaaccagaacccattccttgcctcaaccatggagttgcgaactgtcagttatcttggtgatttgtatcatgtgtttgatgtgagagtcaatgtg...

Basic information

species Zea mays
transcript GRMZM2G158034_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158034_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S97_272V6.1 (Physcomitrella patens), 5'ss of exon 3
ACAAAGACTCTAAATTCAGGCTCATTCTTGTGGAGAGCAGGATCCACCGCCTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaaccagaacccattccttgcctcaaccatggagttgcgaactgtcagttatcttggtgatttgtatcatgtgtttgatgtgagagtcaatgtg--
| || || || || ||| |  | ||| |  | |||||| |  | |||||  | || ||||||||||||||||||||||||||||| |||||||||||||||||||| | |     | || |   |  |  |  | |    ||||    | |      | ||  | |||   | ||| |   |  | | | |    || |   
ATAAGGATTCCAAGTTCCGTTTGATTTTGATCGAGAGCCGTGTACACCGGTTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttaccatatccacactgact-tcgtaggcttctgtttgcaccatcttccacttttttataattctca-catttaggtactctaaaaacatatctttt

upper sequence: GRMZM2G158034_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S39_130V6.1 (Physcomitrella patens), 5'ss of exon 3
ACAAAGACTCTAAATTCAGGCTCATTCTTGTGGAGAGCAGGATCCACCGCCTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaaccagaacccattcctt--gcctcaaccatggagttgcgaactgtcagttatcttggtgatttgtatcatgtgtttgatgtgagagtcaatgtg
|||| |||||||| ||| |  | ||| |  | |||||| |  ||||| | || || ||||||||||||||||| |||||||| || || ||||||||||||||||| |   | |  ||| |||||    || |   ||   |||| | | || ||   ||    | | ||  | |||  | |    | | | | |    |  
ACAAGGACTCTAAGTTCCGATTGATTTTGATCGAGAGCCGTGTCCACAGGCTAGCTCGCTACTACAAGCGCACCAAGAAGCTCCCCCCTACCTGGAAGTAgtaagt-agtaacactccactccttctatctgaggaatattgttgaggaatgacatgaataggtgggcttaatttcac-tctgcagtttcacattattagca

upper sequence: GRMZM2G158034_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S15_29V6.1 (Physcomitrella patens), 5'ss of exon 3
ACAAAGACTCTAAATTCAGGCTCATTCTTGTGGAGAGCAGGATCCACCGCCTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaaccagaacccattccttgcctcaa---ccatggagttgcgaactgtcagt-------tatcttggtgatttgtatcatgtgtttgatgtgagagtcaatgtg------------------------------------------------------------------------------------
|||| || || || ||  | || ||| |  | |||||| |  ||||| |  | || || |||||||||||||| ||||||||||| || ||||||||||||||||||  |     | | ||  |   || ||   | |   ||    ||  | | | |       ||| || ||   | || ||||   |||       |  | ||||                                                                                      
ACAAGGATTCCAAGTTTCGTCTGATTTTGATCGAGAGCCGTGTCCACAGGTTGGCACGTTACTACAAGCGCACCAAGAAGCTTCCTCCTACCTGGAAGTAgtaagtcttcatacccaccttggtcagctaaaggtctacctaggcttgaggtattattgagtagatattttagttgctggt-tcatagatttctctattggctaaatgattgttcattcataagggcaatgtgttgctctttcttcgaattttgtgtaagatatgtactgatactgatttcttcgattttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32802942|gb|CD955178.1|CD955178
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|19821950|gb|BQ047974.1|BQ047974
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|5124312|gb|AI746048.1|AI746048
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCCCAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32929638|gb|CF034450.1|CF034450
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|18383508|gb|BM416708.1|BM416708
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACC-CAGCGAGCACTTTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|15080409|gb|BI389053.1|BI389053
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCC-CCTGGAAGTA                         TGAGTCA-CCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32802749|gb|CD954985.1|CD954985
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|14245523|gb|BG874105.1|BG874105
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32810330|gb|CD962564.1|CD962564
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32803193|gb|CD955429.1|CD955429
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32797756|gb|CD949992.1|CD949992
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32797627|gb|CD949863.1|CD949863
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|211394187|gb|FL455071.1|FL455071
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|19351721|gb|BM896253.1|BM896253
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32800518|gb|CD952754.1|CD952754
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|20513040|gb|BQ280226.1|BQ280226
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32802823|gb|CD955059.1|CD955059
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|60339672|gb|DN206645.1|DN206645
EST:     CTTGCCCGTTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|71328072|gb|DR800682.1|DR800682
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|113680438|gb|DW838525.1|DW838525
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGG
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGG
EST: gi|32913296|gb|CF018108.1|CF018108
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32798060|gb|CD950296.1|CD950296
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32913341|gb|CF018153.1|CF018153
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32864440|gb|CF004122.1|CF004122
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32924244|gb|CF029056.1|CF029056
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32798893|gb|CD951129.1|CD951129
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32797666|gb|CD949902.1|CD949902
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32788881|gb|CD941117.1|CD941117
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32800461|gb|CD952697.1|CD952697
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCAACTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32797604|gb|CD949840.1|CD949840
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32807587|gb|CD959821.1|CD959821
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|17921942|gb|BM259593.1|BM259593
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32800088|gb|CD952324.1|CD952324
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32808764|gb|CD960998.1|CD960998
EST:     CTTGCCCGCTACTACAAGCGCACAAAGGAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32907850|gb|CF012663.1|CF012663
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|4826103|gb|AI667731.1|AI667731
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|18648944|gb|BM497763.1|BM497763
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTG
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTG
EST: gi|32796463|gb|CD948699.1|CD948699
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|113702898|gb|EE680402.1|EE680402
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|32797360|gb|CD949596.1|CD949596
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|17921754|gb|BM259405.1|BM259405
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
EST: gi|211246432|gb|FL454463.1|FL454463
EST:     CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTA                         TGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC
genomic: CTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaac ... ttttgtgcagTGAGTCAACCACAGCGAGCACTCTGGTGGCCTAAGTGTGGTATCCTCCGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAAAGACTCTAAATTCAGGCTCATTCTTGTGGAGAGCAGGATCCACCGCCTTGCCCGCTACTACAAGCGCACAAAGAAGCTTCCACCCACCTGGAAGTAgtaagtcaaccagaacccattccttgcctcaaccatggagttgcgaactgtcagttatcttggtgatttgtatcatgtgtttgatgtgagagtcaatgtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG