ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST

Sequence

atgc intronic sequence ATGC exonic sequence

TATTAACCAAATGGTTGGTCAGAAACTTTCAATTGTAACAGATAAACCGCAAACGACAAGACATCGCATTCTTGGTATATGTTCTGAACCAGAGTACCAGgtatcagaatttaattcagttcaatacaaattaagatcctcggaagttttcggtcccataaccccattagcatcaagtggatcatgttgcttttcgctgctaatctgagttatcgtttagtttgcag

Basic information

species	Zea mays
transcript	GRMZM2G158024_T02
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G158024_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g49220.2 (Oryza sativa), 5'ss of exon 2

TATTAACCAAATGGTTGGTCAGAAACTTTCAATTGTAACAGATAAACCGCAAACGACAAGACATCGCATTCTTGGTATATGTTCTGAACCAGAGTACCAGgtatcagaatttaattcagttcaatacaaattaagatcctcggaagttttcggtcccataaccccattagcatcaagtggatcatgttg-cttttcgctgctaatctgagttatcgtttagtttgcag
 ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||| | |||||||||||||||||||||||||||||||| ||||||||||||   |||| ||   |  ||  |   ||| |||  | |             | || |             ||| ||   |||||   || || |||||||||||||||||| |||||       
AATTAACCAAATTGTTGGTCAGAAACTTTCAATTGTGACAGACAAACCGCAAACCACACGGCATCGCATTCTTGGTATATGTTCTGAACCAGAATACCAGgtatcaccttttagtt---tctaaagct--ttaggattataga------------ctatga-------------aagggggaaatgttaatttctcactgctaatctgagttatcatttag-------

upper sequence: GRMZM2G158024_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g49220.1 (Oryza sativa), 5'ss of exon 2

TATTAACCAAATGGTTGGTCAGAAACTTTCAATTGTAACAGATAAACCGCAAACGACAAGACATCGCATTCTTGGTATATGTTCTGAACCAGAGTACCAGgtatcagaatttaattcagttcaatacaaattaagatcctcggaagttttcggtcccataaccccattagcatcaagtggatcatgttg-cttttcgctgctaatctgagttatcgtttagtttgcag
 ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||| | |||||||||||||||||||||||||||||||| ||||||||||||   |||| ||   |  ||  |   ||| |||  | |             | || |             ||| ||   |||||   || || |||||||||||||||||| ||||||||||||
AATTAACCAAATTGTTGGTCAGAAACTTTCAATTGTGACAGACAAACCGCAAACCACACGGCATCGCATTCTTGGTATATGTTCTGAACCAGAATACCAGgtatcaccttttagtt---tctaaagct--ttaggattataga------------ctatga-------------aagggggaaatgttaatttctcactgctaatctgagttatcatttagtttgcag

upper sequence: GRMZM2G158024_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g49220.1 (Oryza sativa), 5'ss of exon 2

TATTAACCAAATGGTTGGTCAGAAACTTTCAATTGTAACAGATAAACCGCAAACGACAAGACATCGCATTCTTGGTATATGTTCTGAACCAGAGTACCAGgtatcagaatttaattcagttcaatacaaattaagatcctcggaagttttcggtcccataaccccattagcatcaagtggatcatgttg-cttttcgctgctaatctgagttatcgtttagtttgcag
 ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||| | |||||||||||||||||||||||||||||||| ||||||||||||   |||| ||   |  ||  |   ||| |||  | |             | || |             ||| ||   |||||   || || |||||||||||||||||| ||||||||||||
AATTAACCAAATTGTTGGTCAGAAACTTTCAATTGTGACAGACAAACCGCAAACCACACGGCATCGCATTCTTGGTATATGTTCTGAACCAGAATACCAGgtatcaccttttagtt---tctaaagct--ttaggattataga------------ctatga-------------aagggggaaatgttaatttctcactgctaatctgagttatcatttagtttgcag

upper sequence: GRMZM2G158024_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G24870.1 (Glycine max), 5'ss of exon 2

TATTAACCAAATGGTTGGTCAGAAACTTTCAATTGTAACAGATAAACCGCAAACGACAAGACATCGCATTCTTGGTATATGTTCTGAACCAGAGTACCAGgtatcagaatttaattcagttcaatacaaattaagatcctcggaagttttcggtcccataaccccattagcatcaagtggatcatgttgcttttcgctgctaatctgagttatcgtttagtttgcag
    ||||||||| | || || ||  | ||||| || ||||||||||| |||||||| || ||||| |||||  ||||||||||||   | || || |||||       |||| | |  ||   | | | |        | |   |||||   | | | |  ||     |  |||| | |      |||| ||  |  |  |   |||   | |             
GGCGAACCAAATGCTAGGGCAAAAGTTGTCAATAGTTACAGATAAACCTCAAACGACGAGGCATCGGATTCTGTGTATATGTTCTGGCACGGATTATCAGgt-------tttagtcctatttcttcctagtc----ctttagtttgtttttcctactaaacgcctgaatgtgtcaatttggat---ttgcgtt--ggagtcatgttgaaacaccaa-----------

upper sequence: GRMZM2G158024_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA02G06100.1 (Glycine max), 5'ss of exon 2

TATTAACCAAATGGTTGGTCAGAAACTTTCAATTGTAACAGATAAACCGCAAACGACAAGACATCGCATTCTTGGTATATGTTCTGAACCAGAGTACCAGgtatcagaatttaattcagttcaatacaaattaagatcctcggaagttttcggtcccataaccccattagcatcaagtggat-catgttgcttttcgctgctaatctgagttatcgtttagtttgcag
    ||||||||| |||| || ||  | ||||| || ||||||||||| ||||| ||||| ||||| |||||  ||||||||||||     || || ||||| ||| |   || ||      | | |   ||  | |  |      |||||   |  |   ||  | |    | |  ||||| || ||||  ||    | | ||     |||                
GGCAAACCAAATGCTTGGCCAAAAGTTGTCAATAGTTACAGATAAACCTCAAACAACAAGGCATCGGATTCTGTGTATATGTTCTGGCGAGGATTATCAGgtttca-atcctatttttagctagtcc---tttggtttgt------ttttcctactaaacgcctgaatgtgtttatttggattcacgttggatta---ttcaaaatcatgttg---------------

upper sequence: GRMZM2G158024_T02 (Zea mays), 5'ss of exon 2
lower sequence: AT5G66470.1 (Arabidopsis thaliana), 5'ss of exon 2

TATTAACCAAATGGTTGGTCAGAAACTTTCAATTGTAACAGATAAACCGCAAACGACAAGACATCGCATTCTTGGTATATGTTCTGAACCAGAGTACCAGgtatcagaatttaattcagttcaatacaaattaagatcctcggaagttttcggt-cccataaccccattagcatcaagtggatcatgttgcttttcgctgctaatctgagttatcgtttagtttgcag
|   || |||||| ||||||||||| | || ||||| ||||||||||| |||||||| || ||||| ||||||||||| ||||||   || || || ||||| |     ||||  | ||    ||   | ||  ||  ||   |||     |||   |||  |    || | ||  ||   || | | ||      | | | |   || |||   |            
TTCGAATCAAATGATTGGTCAGAAAATATCGATTGTTACAGATAAACCTCAAACGACGAGGCATCGGATTCTTGGTATTTGTTCTAGCCCTGAATATCAGgttt----gtttatctaagcctcat-tgatttttgactcttaaaagaaccaggtgttcattgcttggtttg-atatag-aaattaagatgtcgactgatacaagcttgtgttgcag------------

upper sequence: GRMZM2G158024_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv04s0023g02120.t01 (Vitis vinifera), 5'ss of exon 2

TATTAACCAAATGGTTGGTCAGAAACTTTCAATTGTAACAGATAAACCGCAAACGACAAGACATCGCATTCTTGGTATATGTTCTGAACCAGAGTACCAGgtatcagaatttaattcagttcaatacaaattaagatcctcggaagttttcggtcccataaccccattagcatcaagtggatcatgttgctttt-cgctgctaatctgagttatcgtttagtttgcag
|   ||||||||| | || || ||  | |||||||| || |||||||| ||||| ||||| ||||| || ||||||||||||||||  |||||||| ||||| | |  ||||      ||  |  | | ||||  || || |    |  | |   |  |||    |||  |||        |||  |  || ||  ||  | |  ||||                   
TGCAAACCAAATGATAGGCCAAAAGTTGTCAATTGTTACTGATAAACCTCAAACCACAAGGCATCGAATCCTTGGTATATGTTCTGGTCCAGAGTATCAGgtttgaacatttt-----gtatataatagattatcatgcttgatgttagttgcctctttaa----attttcatttgactt-tcacttaactgttatgcaacaatgctgaa------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211496169|gb|FL037710.1|FL037710

EST:     AACGACAAGACATCGCATTCNTTGGTATATGTTCTGAACCAGAGTACCAG                         ATTATACTTTATGACACGTCCTGGTGTTATTAAAAAGGAGATGCATAAGCT
genomic: AACGACAAGACATCGCATTC-TTGGTATATGTTCTGAACCAGAGTACCAGgtatcagaat ... tagtttgcagATTATACTTTATGACAC-TCCTGGTGTTATTAAAAAGGAGATGCATAAGCT

EST: gi|211496170|gb|FL037711.1|FL037711

EST:     AAACGACAAGACATCGCATTCTTGGTATATGTTCTGGACCAGAGTACCAG                         ATTATACTTTTTGACACTCCTGGTGTTTATTAAAAAGGAGATGCATAAGCT
genomic: AAACGACAAGACATCGCATTCTTGGTATATGTTCTGAACCAGAGTACCAGgtatcagaat ... tagtttgcagATTATACTTTATGACACTCCTGGTGTT-ATTAAAAAGGAGATGCATAAGCT

EST: gi|149086134|gb|EE175674.2|EE175674

EST:     AAACGACAAGACATCGCATTCTTGGTATATGTTCTGAACCAGAGTACCAG                         ATTATACTTTATGACACTCCTGGTGTTATTAAAAAGGAGATGCATAAGCTG
genomic: AAACGACAAGACATCGCATTCTTGGTATATGTTCTGAACCAGAGTACCAGgtatcagaat ... tagtttgcagATTATACTTTATGACACTCCTGGTGTTATTAAAAAGGAGATGCATAAGCTG