1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGCTCCTACGGCTGCTGATGCTACGAACAAGAGGCCCAGGgttagtgccttcttccgcttggatggcagtaaggtttttgctaatcaactgtgagccaatctggcactgattggtactagatccaattagtcttagctta...
species | Zea mays |
transcript | GRMZM2G157836_T07 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGTCTGCTGCTGCTCCTACGGCTGCTGATGCTACGAACAAGAGGCCCAGG GGCAGCGGAAGCTEST: gi|78087902|gb|DV516295.1|DV516295
genomic: CGTCTGCTGCTGCTCCTACGGCTGCTGATGCTACGAACAAGAGGCCCAGGgttagtgcct ... tgtctggcagGCCAGCGGAAGCT
EST: CGTCTGCTGCTGCTCCTACGGCTGCTGATGCTACGAACAAGAGGCCCAGG GCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGAGCTGGAGGTTEST: gi|101400847|gb|EB822121.1|EB822121
genomic: CGTCTGCTGCTGCTCCTACGGCTGCTGATGCTACGAACAAGAGGCCCAGGgttagtgcct ... tgtctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGAGCTGGAGGTT
EST: CGTCTGCTGCTGCTCCTACGGCTGCTGATGCTACGAACAAGAGGCCCAGG GCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGAGCTGGAGGTTEST: gi|50332338|gb|CO527464.1|CO527464
genomic: CGTCTGCTGCTGCTCCTACGGCTGCTGATGCTACGAACAAGAGGCCCAGGgttagtgcct ... tgtctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGAGCTGGAGGTT
EST: GTCTGCTGCTGCTCCTACGGCTGCTGATGCTACGAACAAGAGGCCCCAGG GCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGAGCTGGAGGTEST: gi|71445496|gb|DR826546.1|DR826546
genomic: GTCTGCTGCTGCTCCTACGGCTGCTGATGCTACGAACAAGAGGCCC-AGGgttagtgcct ... tgtctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGAGCTGGAGGT
EST: CGTCTGCTGCTGCTCCTACGGCTGCTGATGCTACGAACAAGAGGCCCAGG GCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGAGCTGGAGGTT
genomic: CGTCTGCTGCTGCTCCTACGGCTGCTGATGCTACGAACAAGAGGCCCAGGgttagtgcct ... tgtctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGAGCTGGAGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAAGGGATCAAGGAACAGCGACCAGAGAAAGGCTGCGTCTGCTGCTGCTCCTACGGCTGCTGATGCTACGAACAAGAGGCCCAGGgttagtgccttcttccgcttggatggcagtaaggtttttgctaatcaactgtgagccaatctggcactgattggtactagatccaattagtcttagctta
- - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG