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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCATCGAGCCGCTTCTTGTAGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctacatctctgctgcatgagaggtggtatattttcatagtttttcttgatattggtgtttgtgattgtctgtaacag

Basic information

species Zea mays
transcript GRMZM2G157772_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157772_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 5
ATGTCATCGAGCCGCTTCTTGTAGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgta-------tgctacat------ctctgctgca---------tgagaggtggtatattttcatagtttttcttgatattggtgtttgtg-attgtctgtaacag
|||||| | |||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||       |  || ||      ||||| |            | | |         | |||||    | |  |||||||    |   || ||  ||    ||||
ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctctattatatatataactctgttaagtccaactattcaaatacaaatcttgttcatgtcctgttctgatatttaaatggatgtataatcatgtacag

upper sequence: GRMZM2G157772_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 4
ATGTCATCGAGCCGCTTCTTGTAGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgc-tacatctctgctgcatgagaggtggtatatttt--catagtttttcttgatattggtgtttgtgattgtctgtaacag----------------
||||||  ||||   |  |  | || ||||| ||||||||||| ||||| ||||| ||||| ||||| ||||||||  |||||||||| |||||  |  | | |     || | |      |  | |  |||  |||  |  |    | | |     |   | |||   || | |||                
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAGgtgggggttcgtagagtctacctttatatttctgtcatttaccatgatcctgtcagctgtctacatgatttatttcttgca-cagaagtggctttaggtct

upper sequence: GRMZM2G157772_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 5
ATGTCATCGAGCCGCTTCTTGTAGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatg----ctacatctctgctgcatgagaggtggtatattttcatagtttttcttgatattggtgtttgtgattgtctgtaacag---------------
||||||  ||||   |  |  | || ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||  |||||||||| |||||  |    ||     ||| ||     |    ||  || ||  |||  |  |    | | |     |   | |||   || |   |               
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtgggggttcttagattctacttttatatttctgtcat-ttaccatgatcctgtcagctgtctacatgatttatttcttgcacaggagtagttttagttcc

upper sequence: GRMZM2G157772_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 4
ATGTCATCGAGCCGCTTCTTGTAGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctacatctctgctgcatgagaggtggtatattttcatagtttttcttgatattggtgtttgtgat-tgtctgtaacag
|||| | ||||||  |  |  | || ||||| |  || || || |||||||| ||||| || || |||||||||||  ||||||||||||||||  |    |     | |  ||      |   |  ||   ||| |     | | || |      | | || ||| | |  |||
ATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgttcgtgtgaatatagatatattctca-tatcaccttcatataatcagaatcgttagttactgatctaatatgtttatg-cag