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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCGTCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaatctcgccggttctgctcagtctgctgcgcttgcgattaggtttcccgaatctgtgtattcgttgtgacacgacccttagctttattcttg...

Basic information

species Zea mays
transcript GRMZM2G157316_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157316_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g16330.1 (Oryza sativa), 5'ss of exon 2
GAACGCGCCGGTGACGCGGGCGGTCGTCGTCGCGAGCGGCCTCCTGTCCGTCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa-tctcgccggttctgctcagtctgctgc--gcttgcgattaggtttcccga-atctgtgtattcgttgtgacacgaccctta-gctttattcttg
||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||| | ||||  |||||||   ||    || | ||    |||   || | |  ||    |  ||||| | ||| | |  | ||||    | |||  | ||||| | ||  | | | |     
GAACGCGCCGGTGACGCGGGCCGTCGTCCTCGCCAGCGGCCTCCTCTCCGTCGTCTTCAGCGCCCAGCGCCGCGCCCGCGCCCTCGTCCTCTCCCACCAGgtcatcctccctccctccctccctggatagccgggcgccgaatctcgattggtttttcaggcagctgttccgtggttaggtcacgagcgttgtgttgtgt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211402081|gb|FL455828.1|FL455828
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GTTTTGGATTTGTTGCGCAACTGGGAGTATTGGCTCTTCATTATTGAAGGT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... agggtttcagGTTTTGGATTTGTTGCGCAACTGGGAGTATTGGCTCTTCATTATTGAAGGT
EST: gi|211523742|gb|FL258544.1|FL258544
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GTTTTGGATTTGTTGCGCAACTGGGAGTATTGGCTCTTCATTATTGAAGGT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... agggtttcagGTTTTGGATTTGTTGCGCAACTGGGAGTATTGGCTCTTCATTATTGAAGGT