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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATGTTCAAGAGCTGGAGATTGTTGAAAGGTTTCGCCAGTGTTTACTTGATGATGGTCTGTTGCCAGAACATCACGATGATTATCACACGATGTTGAGgtattgctgcatctgatttgctcatcttaagtttcttggttcttctcttctgtcaagtttttatttcctgcacaatatttttacatggaaaaaactcatgaatagaatttcgcccccttatttggtttaacttttctttctatgccttttacatgtag

Basic information

species Zea mays
transcript GRMZM2G157043_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157043_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g50616.1 (Oryza sativa), 5'ss of exon 2
GAGATGTTCAAGAGCTGGAGATTGTTGAAAGGTTTCGCCAGTGTTTACTTGATGATGGTCTGTTGCCAGAACATCACGATGATTATCACACGATGTTGAGgtattgctgcatctgatttgctcatcttaagtttcttggttcttctcttctgtcaagtttttatttcctgcacaatatttttacatggaaaaaactcatgaatagaatttcgcccccttatttggtttaacttttctttctatgccttttacatgtag---------
| |||||  | ||||||||   |||  |||| |||| |||||| |||| |||||| ||  |||||||||||| ||| ||||||||||||  |||||||||||     |        ||| || |||| |   |    | | |||             ||| |  || || |              || | |||| |||    |             |||||||| |||||  ||||||  | ||||| | ||||||           
GGGATGTCAAGGAGCTGGAAGCTGTCCAAAGATTTCACCAGTGCTTACATGATGAGGGCTTGTTGCCAGAACGTCATGATGATTATCACGTGATGTTGAGgtgcaattt-------ttttctgatctcagagtcacagttactt----------ggatttctccttactcc--------------tgcagaaaattcagcgttg------------cttatttgatttaaaatttcttcatgtgcctatgacatgttacacatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60356198|gb|DN223171.1|DN223171
EST:     GATGATGGTCTGTTGCCAGAACATCACGATGATTATCACACGATGTTGAG                         GTTCCTGAAAGCAAGAAAATTTAATATTGACAGAGCAAAACATATGTGGTC
genomic: GATGATGGTCTGTTGCCAGAACATCACGATGATTATCACACGATGTTGAGgtattgctgc ... ttacatgtagGTTCCTGAAAGCAAGAAAATTTAATATTGACAAAGCAAAACATATGTGGTC
EST: gi|42491822|gb|CK700868.1|CK700868
EST:     GATGATGGTCTGTTGCCAGAACATCACGATGATTATCACACGATGTTGAT                         GTTCCTGAAAGCAAGAAAATTTAATATTGACAAAGCAAAACATATGTGGTC
genomic: GATGATGGTCTGTTGCCAGAACATCACGATGATTATCACACGATGTTGAGgtattgctgc ... ttacatgtagGTTCCTGAAAGCAAGAAAATTTAATATTGACAAAGCAAAACATATGTGGTC