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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTTCCAAAAGCTGAGATGCCTTCGGTGGCTGGTCAATGGCAGAAAGGAAAACTCTTGGGTAGTGGCACCTTTGGATGCGTGTATGAGGCCACCAATAGgtatatcagcgcaattttttggcatcgtgattattccttcattttagattctgatttttgttcttattcacgtacataaag

Basic information

species Zea mays
transcript GRMZM2G156800_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156800_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g55560.2 (Oryza sativa), 5'ss of exon 2
TAGTTCCAAAAGCTGAGATGCCTTCGGTGGCTGGTCAATGGCAGAAAGGAAAACTCTTGGGTAGTGGCACCTTTGGATGCGTGTATGAGGCCACCAATAGgtatatcagcgcaattt-tttggcatcgtgattattccttcattttagattctgatttttgttcttattcacgtacataaag
 ||||||||||| |||    || ||  |||||||||| ||||| |||||||| ||| | || ||||| || |||||||| || ||||||||| |||||||||||   |  ||| ||| | | ||||  || ||  |   |||| ||| | | |||   ||     |     |  || || ||
CAGTTCCAAAAGTTGATGCACCCTCAATGGCTGGTCAGTGGCAAAAAGGAAAGCTCATTGGCAGTGGAACATTTGGATGTGTATATGAGGCCGCCAATAGgtatgcaaatgcattttatatagcattatgtttgctggatcatcttaaagtttgaacatttcatctggcatctaacgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50338068|gb|CO533194.1|CO533194
EST:     AAACTCTTGGGTAGTGGCACCTTTGGATGCGTGTATGAGGCCACCAATAG                         GCACACTGGAGCTCTTTGTGCCATGAAAGAGGTGAATATAATTCCAGATGA
genomic: AAACTCTTGGGTAGTGGCACCTTTGGATGCGTGTATGAGGCCACCAATAGgtatatcagc ... gtacataaagGCACACTGGAGCTCTTTGTGCCATGAAAGAGGTGAATATAATTCCAGATGA
EST: gi|211321746|gb|FL182475.1|FL182475
EST:     ACCTCT-GGGTAGTGGCACCTTTTGGATGCGTGTATGAGGCCACCCATAN                         GCACACTGGAGCTCTTTGTGCCATGAAAGAGGTGAATATA-TTCCAGATGA
genomic: AC-TCTTGGGTAGTGGCACCTTT-GGATGCGTGTATGAGGCCACCAATAGgtatatcagc ... gtacataaagGCACACTGGAGCTCTTTGTGCCATGAAAGAGGTGAATATAATTCCAGATGA