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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACCACTGGTGCCAGGGAGAGTGCTTTCCGGAACATCAAAACCATTGCCGAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgttgcctgtttgcttcttgtctatctgtgattccgcacgatgtgaaattgttctcattcgtgccaattcttgttacag

Basic information

species Zea mays
transcript GRMZM2G156673_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156673_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
TCACCACTGGTGCCAGGGAGAGTGCTTTCCGGAACATCAAAACCATTGCCGAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgttgcctgtttgcttcttgtctatctgtgattccgcacgatgtgaaattgttctcattcgtgccaattcttgttacag
|||||||||| |||||||||||||| ||  |||||||||| |||||||| ||||||||||| |||||||| ||||| || ||||||||||||||||||||||| ||      | || ||     |||   |  || |  | |    ||        || ||| |||| ||  |     ||||||||
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaat------cttgcttctcatttgatgaaatgaggctac---tgacacatccatgctctaattc-tgata-----tgttacag

upper sequence: GRMZM2G156673_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g29190.2 (Oryza sativa), 5'ss of exon 3
TCACCACTGGTGCCAGGGAGAGTGCTTTCCGGAACATCAAAACCATTGCCGAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtaca-tatgttgcctgtttgcttcttgtctatctgtgattccgcacgatgtgaaattgtt--ctcattcgtg-ccaattcttgttacag
|||||||||||||||||||||| || ||| |||||||||| |||||||| ||||||||||| || ||||| || || || |||||||||||||||||||||||||  |  ||| |    | | |||||  | | |||     || | |||   |  || ||  | |||  |||  | | |  |||| |||
TCACCACTGGTGCCAGGGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttgctt-tttgt----tcggatgataccaggttattgacacatctgtgatctaattgtgtttcag

upper sequence: GRMZM2G156673_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
TCACCACTGGTGCCAGGGAGAGTGCTTTCCGGAACATCAAAACCATTGCCGAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtaca-tatgttgcctgtttgcttcttgtctatctgtgattccgcacgatgtgaaattgtt--ctcattcgtg-ccaattcttgttacag
                |||||| || ||| |||||||||| |||||||| ||||||||||| || ||||| || || || |||||||||||||||||||||||||  |  ||| |    | | |||||  | | |||     || | |||   |  || ||  | |||  |||  | | |  |||| |||
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttgctt-tttgt----tcggatgataccaggttattgacacatctgtgatctaattgtgtttcag

upper sequence: GRMZM2G156673_T03 (Zea mays), 5'ss of exon 2
lower sequence: AT2G37270.1 (Arabidopsis thaliana), 5'ss of exon 4
TCACCACTGGTGCCAGGGAGAGTGCTTTCCGGAACATCAAAACCATTGCCGAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgttgcctgtttgcttcttgtctatctgtgattccgcacgat-gtgaaattgtt---ctcat--tcgtgccaattcttgt--tacag
| || ||||||||  | ||   ||| ||  | |||||||| || || || ||||||||||| ||||| || ||||| ||||| ||||| || |||||||||||   |   |   | |        ||||| |   ||  | | |   || || |  | |||   || ||  | |   |   ||||||  | |||
TTACAACTGGTGCACGTGAAGCTGCCTTTAGAAACATCAAGACAATCGCTGAGTGCCTTGCTGATGAACTCATCAATGCTGCAAAGGGATCTTCCAACAGgtaagaacactctatctacatagtctgtctcttgatggcttcactttattgttagttagttaagctaataatagcatcttctcttgtcttgcag

upper sequence: GRMZM2G156673_T03 (Zea mays), 5'ss of exon 2
lower sequence: AT3G11940.2 (Arabidopsis thaliana), 5'ss of exon 4
TCACCACTGGTGCCAGGGAGAGTGCTTTCCGGAACATCAAAACCATTGCCGAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgttgcctgtttgcttcttgtctatctgtgattccgcacgatgtgaaattgttctcattcgtgccaattcttgttacag
| |||||||||||  | ||   ||||||| | |||||||| || || || ||||||||||| |||||  |||||||||| ||||||||||| ||||||||||| |||   | ||   |  ||||    ||||   | ||    |   | |||||  |  |     | |  |   |   | || |||
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacacttccaaatgacttc---actattgttcatataacttaaagtgaagctaat---gattgaactgttatgtcttgcag

upper sequence: GRMZM2G156673_T03 (Zea mays), 5'ss of exon 2
lower sequence: EDP01658 (Chlamydomonas reinhardtii), 5'ss of exon 6
TCACCACTGGTGCCAGGGAGAGTGCTTTCCGGAACATCAAAACCATTGCCGAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgttgcctgtttgcttcttgtct----atctgtgattccgca---cgatgtgaaattgttctcattcgtgccaattcttgttacag-----------
  |||||||| ||| | |||   || ||||| |||||||| |||||||| |||||||| || || |||||| | ||||||||||||||||| ||||||||||        ||| |  | ||    ||       ||  | |   ||  |   ||  ||||    |    || | |||||   | | || |              
--ACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATCAAGACCATTGCGGAGTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgc-ctgcgtactagcacgatgggctaggattggaggcgccagaggccgccgtgaggcgggcggcagtggtgccgggt-tggtcaggcatccaagaaaa

upper sequence: GRMZM2G156673_T03 (Zea mays), 5'ss of exon 2
lower sequence: EFJ17708 (Selaginella moellendorffii), 5'ss of exon 4
TCACCACTGGTGCCAGGGAGAGTGCTTTCCGGAACATCAAAACCATTGCCGAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgttgcctgtttgcttcttgtctatctgtgattccgcacgatgtgaaattgttctcattcgtgccaattcttgttacag
|||| ||||| ||  | |||||||||||||| |||||||| ||||| |||||||||||||| || ||||| || || || |||||||| || |||||||||||| |  |  ||| |     |||||  || ||       || || | | | || ||   ||  ||  ||    |||         
TCACTACTGGAGCTCGCGAGAGTGCTTTCCGAAACATCAAGACCATCGCCGAGTGCCTTGCTGACGAGCTCATGAATGCCGCCAAGGGATCTTCCAACAGgtacct-cgcggccag--aaattctt-cctctc------gcctcaagctctaaagtt--ccttgtttttgatgtttcag-------

upper sequence: GRMZM2G156673_T03 (Zea mays), 5'ss of exon 2
lower sequence: EFJ16239 (Selaginella moellendorffii), 5'ss of exon 4
TCACCACTGGTGCCAGGGAGAGTGCTTTCCGGAACATCAAAACCATTGCCGAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgttgcctgtttgcttcttgtctatctgtgattccgcacgatgtgaaattgttctcattcgtgccaattcttgttacag
|||| ||||| ||  | |||||||||||||| |||||||| ||||| ||||||||||| || || ||||| || || || |||||||| || |||||||||||| | ||  ||| |     ||||| ||| ||       || || | | | || ||  |    || ||     ||  |||| |||
TCACTACTGGAGCTCGCGAGAGTGCTTTCCGAAACATCAAGACCATCGCCGAGTGCCTCGCTGACGAGCTCATGAATGCCGCCAAGGGATCTTCCAACAGgtacct-tgcggccag--aaattctt-tctctc------gcctcaagctctaaagttccttgtttttgttt---ttgatgtttcag

upper sequence: GRMZM2G156673_T03 (Zea mays), 5'ss of exon 2
lower sequence: EFJ37091 (Selaginella moellendorffii), 5'ss of exon 4
TCACCACTGGTGCCAGGGAGAGTGCTTTCCGGAACATCAAAACCATTGCCGAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgttgcctgtttgcttcttgtctatctgtgattccgcacgatgtgaaattgttctcattcgtgccaattcttgttacag
|||||||||| ||  | |||||||||||||| |||||||| ||||| |||||||||||||| || |||||||| || ||||| ||||| || |||||||||||| |          | |   || ||  |   ||  |      | ||  |     ||| ||  || |   ||             
TCACCACTGGAGCTCGCGAGAGTGCTTTCCGTAACATCAAGACCATCGCCGAGTGCCTTGCTGACGAGCTGATGAATGCTGCAAAGGGATCGTCCAACAGgtacttcctacattgttctagctcatgctt---tgaaagaaactaagagctccttctgtgcttgtttgcatcag------------

upper sequence: GRMZM2G156673_T03 (Zea mays), 5'ss of exon 2
lower sequence: EFJ18003 (Selaginella moellendorffii), 5'ss of exon 4
TCACCACTGGTGCCAGGGAGAGTGCTTTCCGGAACATCAAAACCATTGCCGAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgttgcctgtttgcttcttgtctatctgtgattccgcacgatgtgaaattgttctcattcgtgccaattcttgttacag
|||||||||| ||  | |||||||||||||| |||||||| ||||| |||||||||||||| || |||||||| || ||||| ||||| || ||||||||||||      | |||   |  |||| |   ||       |  | | ||    ||      | | |  ||||   ||    | |   
TCACCACTGGAGCTCGCGAGAGTGCTTTCCGTAACATCAAGACCATCGCCGAGTGCCTTGCTGACGAGCTGATGAATGCTGCAAAGGGATCGTCCAACAGgtac------ttcctacattgttctagctcat-----gctttgaaagaaactaag--agccccttctgtgcttgtttgcatcag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78107816|gb|DV526234.1|DV526234
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|71767824|gb|DR965761.1|DR965761
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|78092086|gb|DV520460.1|DV520460
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|60345724|gb|DN212697.1|DN212697
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|20300052|gb|BQ162995.1|BQ162995
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAG
EST: gi|91869648|gb|EB400479.1|EB400479
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|71771781|gb|DR969718.1|DR969718
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|76019684|gb|DT946854.1|DT946854
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|76019683|gb|DT946853.1|DT946853
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|16920145|gb|BM074522.1|BM074522
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|71317080|gb|DR795223.1|DR795223
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|211256795|gb|FL058281.1|FL058281
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|29946245|gb|CB816052.1|CB816052
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|28911082|gb|CB331761.1|CB331761
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCCACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|94474020|gb|EB702978.1|EB702978
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|28931176|gb|CB334537.1|CB334537
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|5688506|gb|AI941521.1|AI941521
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|28986525|gb|CB351180.1|CB351180
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|161580788|gb|EY952728.1|EY952728
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGG
EST: gi|4299154|gb|AI438864.1|AI438864
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|91049248|gb|EB159666.1|EB159666
EST:     AACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: AACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|91869650|gb|EB400480.1|EB400480
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|4775941|gb|AI664944.1|AI664944
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|5343154|gb|AI795339.1|AI795339
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|30087320|gb|CB885528.1|CB885528
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|211320073|gb|FL327294.1|FL327294
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|27521934|gb|CA989040.1|CA989040
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCCTCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCCACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|60352252|gb|DN219225.1|DN219225
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|211187310|gb|FL173190.1|FL173190
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|60351930|gb|DN218903.1|DN218903
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|18175021|gb|BM350409.1|BM350409
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|60355593|gb|DN222566.1|DN222566
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|166582672|gb|EG287653.1|EG287653
EST:     ATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: ATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|71302061|gb|DR787112.1|DR787112
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCACCAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|5915597|gb|AW053238.1|AW053238
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|71764537|gb|DR962474.1|DR962474
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|8930005|gb|BE224843.1|BE224843
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGGCGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|78110566|gb|DV528974.1|DV528974
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|78074598|gb|DV503032.1|DV503032
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|110518388|gb|EE022975.1|EE022975
EST:     GAGTGCCTTGCAGATGAGGTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGAGGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|60352954|gb|DN219927.1|DN219927
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|29130979|gb|CB381683.1|CB381683
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCCTCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCCACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|29946327|gb|CB816094.1|CB816094
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
EST: gi|29945042|gb|CB815439.1|CB815439
EST:     GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAG                         TTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgt ... cttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCACCACTGGTGCCAGGGAGAGTGCTTTCCGGAACATCAAAACCATTGCCGAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgttgcctgtttgcttcttgtctatctgtgattccgcacgatgtgaaattgttctcattcgtgccaattcttgttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT