1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGCCGTGGACAAGTACAGCAGCGCCTATGTTTTTACCTACGATAACATGAGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAGgcacggcgcccacattgcatgtctgttgattccgtcttctgctttggtcaaatccatcttacccttccaagcaatatttttctgttccag
species | Zea mays |
transcript | GRMZM2G155437_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAATCAGAAGCTCAAGGACCTCAGGGAGCCAGCTCAAGTCTTCTAGCAG GATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCACCEST: gi|211011964|gb|FL302300.1|FL302300
genomic: GGAATCAGAAGCTCAAGGACCTCAGGGAG-CAGCTCAAGTCTTCTAGCAGgcacggcgcc ... tctgttccagGATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCAGC
EST: GGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCGAAGTCTTCTAGCAG GATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCACCEST: gi|18450755|gb|BM429033.1|BM429033
genomic: GGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTC-AAGTCTTCTAGCAGgcacggcgcc ... tctgttccagGATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCAGC
EST: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG GATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCACCEST: gi|211011963|gb|FL302299.1|FL302299
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAGgcacggcgcc ... tctgttccagGATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCAGC
EST: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG GATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCACCEST: gi|211520197|gb|FL010166.1|FL010166
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAGgcacggcgcc ... tctgttccagGATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCAGC
EST: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG GATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCACCEST: gi|211520200|gb|FL010169.1|FL010169
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAGgcacggcgcc ... tctgttccagGATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCAGC
EST: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG GATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCACCEST: gi|32907095|gb|CF011908.1|CF011908
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAGgcacggcgcc ... tctgttccagGATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCAGC
EST: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG GATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCACCEST: gi|211011965|gb|FL302301.1|FL302301
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAGgcacggcgcc ... tctgttccagGATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCAGC
EST: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG GATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCACCEST: gi|15100390|gb|BI396181.1|BI396181
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAGgcacggcgcc ... tctgttccagGATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCAGC
EST: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG GATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCACCEST: gi|32838220|gb|CD977898.1|CD977898
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAGgcacggcgcc ... tctgttccagGATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCAGC
EST: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG GATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCACCEST: gi|211011962|gb|FL302298.1|FL302298
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAGgcacggcgcc ... tctgttccagGATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCAGC
EST: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCMGCTCAAGTCTTCTAGCAG GATATTTCTCGCTGGGAAGAAGGTTATGCAEST: gi|211520196|gb|FL010165.1|FL010165
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAGgcacggcgcc ... tctgttccagGATATTTCTCGCTGGGAAGAAGGTTATGCA
EST: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG GATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCACCEST: gi|211009194|gb|FL302295.1|FL302295
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAGgcacggcgcc ... tctgttccagGATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCAGC
EST: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG GATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCACCEST: gi|211520199|gb|FL010168.1|FL010168
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAGgcacggcgcc ... tctgttccagGATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCAGC
EST: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG GATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCACCEST: gi|211520198|gb|FL010167.1|FL010167
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAGgcacggcgcc ... tctgttccagGATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCAGC
EST: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG GATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCACCEST: gi|78081476|gb|DV509888.1|DV509888
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAGgcacggcgcc ... tctgttccagGATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCAGC
EST: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG GATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCAGCEST: gi|211011966|gb|FL302302.1|FL302302
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAGgcacggcgcc ... tctgttccagGATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCAGC
EST: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAG GATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCACC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAGgcacggcgcc ... tctgttccagGATATTTCTCGCTGGGAAGAAGGTTATGCAGATAGCGCTGGGGCGTTCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCCGTGGACAAGTACAGCAGCGCCTATGTTTTTACCTACGATAACATGAGGAATCAGAAGCTCAAGGACCTCAGGGAGCAGCTCAAGTCTTCTAGCAGgcacggcgcccacattgcatgtctgttgattccgtcttctgctttggtcaaatccatcttacccttccaagcaatatttttctgttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA