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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGTGTCCCGGTGATAATTTCCCTCGCCAAGGGAATTGAGGCCTCGTTGGATCCAATACCTCGTATCATTACACCTACTCAAATGATTAGCTCTGCAAgtaagaatctctcttgtctctgcctgcgtattttaaactcaatcaccacaagtttccttgaggaagctgaatggtattggttgcaagaaaaatattatga...

Basic information

species Zea mays
transcript GRMZM2G155348_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155348_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g71280.1 (Oryza sativa), 5'ss of exon 2
ATTAGTGTCCCGGTGATAATTTCCCTCGCCAAGGGAATTGAGGCCTCGTTGGATCCAATACCTCGTATCATTACACCTACTCAAATGATTAGCTCTGCAAgtaagaatctctcttgtctctgcctgcgtat---tttaaactcaatcaccacaagtttccttgaggaagctgaatggtattggttgcaagaaaaatattatga
|| || || ||||||||||| || ||||| ||||| || || || || ||||| ||||| |||||||||||||| || || || |||||||| |||||||||||| | ||||||  | |||   ||| |||   |  |  ||||   |  |  |   || ||  |  |    | ||  ||        |||||   | |  | 
ATCAGCGTTCCGGTGATAATCTCGCTCGCAAAGGGGATAGAAGCATCCTTGGACCCAATTCCTCGTATCATTACGCCCACGCAGATGATTAGTTCTGCAAgtaagcagctctctcttatctctttgcttatgcctacatgctcacctattaagatactctttatgtcat---agtgtcatcaaggaatagaaatggagttggt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76294146|gb|DV033714.1|DV033714
EST:     GGATCCAATACCTCGTATCATTACACCTACTCAAATGATTAGCTCTGCAA                         CTGGAGTTCCAACTGAAAATATACTCTATCTTGGAGGACCAAACATCGCCT
genomic: GGATCCAATACCTCGTATCATTACACCTACTCAAATGATTAGCTCTGCAAgtaagaatct ... tgcattgcagCTGGAGTTCCAACTGAAAATATACTCTATCTTGGAGGACCAAACATCGCCT
EST: gi|148957067|gb|EC903035.2|EC903035
EST:     GGATCCAATACCTCGTATCATTACACCTACTCAAATGATTAGCTCTGCAA                         CTGGAGTTCCAACTGAAAATATACTCTATCTTGGA
genomic: GGATCCAATACCTCGTATCATTACACCTACTCAAATGATTAGCTCTGCAAgtaagaatct ... tgcattgcagCTGGAGTTCCAACTGAAAATATACTCTATCTTGGA
EST: gi|74237292|gb|DT645206.1|DT645206
EST:     GGATCCAATACCTCGTATCATTACACCTACTCAAATGATTAGCTCTGCAA                         CTGGAGTTCCAACTGAAAATATACTCTATCTTGGAGGACCAAACATCGCCT
genomic: GGATCCAATACCTCGTATCATTACACCTACTCAAATGATTAGCTCTGCAAgtaagaatct ... tgcattgcagCTGGAGTTCCAACTGAAAATATACTCTATCTTGGAGGACCAAACATCGCCT
EST: gi|148950990|gb|EC896635.2|EC896635
EST:     GGATCCAATACCTCGTATCATTACACCTACTCAAATGATTAGCTCTGCAA                         CTGGAGTTCCAACTGAAAATATACTCTATCTTGGAGGACCAAACATCGCCT
genomic: GGATCCAATACCTCGTATCATTACACCTACTCAAATGATTAGCTCTGCAAgtaagaatct ... tgcattgcagCTGGAGTTCCAACTGAAAATATACTCTATCTTGGAGGACCAAACATCGCCT
EST: gi|74245778|gb|DT653692.1|DT653692
EST:     GGATCCAATACCTCGTATCATTACACCTACTCAAATGATTAGCTCTGCAA                         CTGGAGTTCCAACTGAAAATATACTCTATCTTGGAGGACCAAACATCGCCT
genomic: GGATCCAATACCTCGTATCATTACACCTACTCAAATGATTAGCTCTGCAAgtaagaatct ... tgcattgcagCTGGAGTTCCAACTGAAAATATACTCTATCTTGGAGGACCAAACATCGCCT