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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCCGGAGTATGTCCGCTACCTTGTTAGAATTGCCAACAGTAAAATGGAGGCAAATAAAAGGCGAATGAATGGATTTTTGGATCTCTTGCAAACTAAGgtattgagctattttgtcttattgtgttccttgtactgtcgctcacttttttttgttagctttcatagcaaaaatgtttggaaactttggatattgttta...

Basic information

species Zea mays
transcript GRMZM2G154574_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154574_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g33100.1 (Oryza sativa), 5'ss of exon 2
TTCTCCGGAGTATGTCCGCTACCTTGTTAGAATTGCCAACAGTAAAATGGAGGCAAATAAAAGGCGAATGAATGGATTTTTGGATCTCTTGCAAACTAAGgtattgagctattttgtcttattgtgttccttgta---ctgtcgctcacttttttttg---ttagctttcatagcaaaaatgtttggaaactttggatattgttta
 ||||| || ||| |  | ||||||||||||||||||||||||||||||||||| || || | |||||||  ||||||  ||||||| |||||  |||||||||      | ||||  |    ||   | ||  |   ||     |  |   ||| ||   ||     ||||  | ||   |     || | |  |||||      
CTCTCCTGATTATATTAGGTACCTTGTTAGAATTGCCAACAGTAAAATGGAGGCTAACAAGAAGCGAATGGGTGGATTCCTGGATCTTTTGCAGGCTAAGgtatcatttgactttgcataccggtaggcattacatacctcatatttgcacctttctggcattgctgctcatctctaactgggcaataaccatgtgatat------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18964286|gb|BM660918.1|BM660918
EST:     AGGCAAATAAAAGGCGAATGAATGGATTTTTGGATCTCTTGCAAACTAAG                         GGTTTGTCATACCCATCAGGGTTATCAAACAACTCTAATAGTGGTGGTCAG
genomic: AGGCAAATAAAAGGCGAATGAATGGATTTTTGGATCTCTTGCAAACTAAGgtattgagct ... aaattgcaagGGTTTGTCATACCCATCAGGGTTATCAAACAACTCTAATAGTGGTGGTCAG