Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctccgtaaccgcggtcaactctcctcgccagtttaattgtttgctgtcttcgcggattctggcggatcttggattcgccggtttcttcattta...

Basic information

species Zea mays
transcript GRMZM2G153991_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153991_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g68710.2 (Oryza sativa), 5'ss of exon 2
CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgt---ctgtgctccgtaaccgcggt--caactctcctcgccagtttaattgtttgctgtcttcgcggattctggcggatcttggattcgccggtttcttcattta
| ||||||||||||||||| || ||||| |||||||||||||| || |||||   | ||  |   |    |   |  | | |||     |  | |  | ||  | |||     || || |  | || ||      |    | | |  | | |   
CTTCGGCCAAGAAGTCCGGAGATGTCACGGAGCTTCAGATCGGTGTGAAGgtaaccggttttttctggttgttcttgcgattcttgcttcggggtgtagtggat-ctgatactgctgagttcgtcg-attcgatgtatatctgctaatccgt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211034324|gb|FL376241.1|FL376241
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211117648|gb|FL049547.1|FL049547
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|30031799|gb|CB833650.1|CB833650
EST:     CGTC-GCCAAGAAGTCCGGCGACGTCCCCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|91054743|gb|EB165161.1|EB165161
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|24773940|gb|CA409194.1|CA409194
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|149005134|gb|EE039667.2|EE039667
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|22819346|gb|BU499436.1|BU499436
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|148931677|gb|EC874859.2|EC874859
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211116860|gb|FL049534.1|FL049534
EST:     CGTCGGCCRRGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211150009|gb|FL374643.1|FL374643
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAS-ACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|30031800|gb|CB833651.1|CB833651
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211240981|gb|FL293639.1|FL293639
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211117646|gb|FL049545.1|FL049545
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAASSACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211205079|gb|FL419130.1|FL419130
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAA-SACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211117644|gb|FL049543.1|FL049543
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAS-ACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211117643|gb|FL049542.1|FL049542
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211116864|gb|FL049538.1|FL049538
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAA-SACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211117642|gb|FL049541.1|FL049541
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211082659|gb|FL412223.1|FL412223
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211117649|gb|FL049548.1|FL049548
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|116823847|gb|EC867424.1|EC867424
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211116857|gb|FL049531.1|FL049531
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAASSACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211117645|gb|FL049544.1|FL049544
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211116862|gb|FL049536.1|FL049536
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAASSACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|22542120|gb|BU092558.1|BU092558
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211079084|gb|FL380731.1|FL380731
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|61117989|gb|DN558950.1|DN558950
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|32865924|gb|CF005606.1|CF005606
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211453697|gb|FL370753.1|FL370753
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|149090104|gb|EE179400.2|EE179400
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211389797|gb|FL380127.1|FL380127
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|21987364|gb|BQ778892.1|BQ778892
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211122276|gb|FL373651.1|FL373651
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|149071444|gb|EE159839.2|EE159839
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|149005133|gb|EE039666.2|EE039666
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|60399310|gb|DN232124.1|DN232124
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|211059587|gb|FL481931.1|FL481931
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|149071445|gb|EE159840.2|EE159840
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: gi|24773190|gb|CA408444.1|CA408444
EST:     CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG                         TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 388

CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGGTTCACTATCGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 285

CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGGTTCACTATCGT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 227

CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGGTTCACTATCGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 635

CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGGTTCACTATCGT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctccgtaaccgcggtcaactctcctcgccagtttaattgtttgctgtcttcgcggattctggcggatcttggattcgccggtttcttcattta

- - - - AAGAAG
- - - -  AGAAGT
- - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcgcc