Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGGTGACATTGATTTTAAGCATGTCGGCTTCAAATACCCATCCCGTCCTGATGTTCAAATTTTCACTGACTTCACCTTAACCATTCCCTCTGGAAAGgtcaaaactataccagaaatctaatttgtcattcttctctcagttattatgaggactaaattttttatgccatcatttttctgaggtcttacacagaacccttttattgcag

Basic information

species Zea mays
transcript GRMZM2G153961_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153961_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g47500.1 (Oryza sativa), 5'ss of exon 12
CAAGGGTGACATTGATTTTAAGCATGTCGGCTTCAAATACCCATCCCGTCCTGATGTTCAAATTTTCACTGACTTCACCTTAACCATTCCCTCTGGAAAGgtcaaaactataccagaaatctaattt-gtcattcttctctcagttattatgaggactaaattttttatgccatcatttttctgaggtcttacacagaacccttttattgcag
||||||||||||||| |||| |||| || | |||| ||||||||||||||| ||||||||||| |||| |||||| ||||| | ||| |||||||| ||||||  || | || |||||  ||||||| |||| | |||||||| || || |      | ||  |||  |    | ||| | | | |  || || || ||||   |||||||||
CAAGGGTGACATTGAATTTACGCATATCAGTTTCAGATACCCATCCCGTCCAGATGTTCAAATCTTCAGTGACTTTACCTTGAGCATCCCCTCTGGGAAGgtcttaatt-taacagaagcctaattttgtcaatgttctctcaattttttttt---ttgaagatttagt----ttattgtccaggga-ctaactcaaaacctgcttattgcag

upper sequence: GRMZM2G153961_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv10s0003g02580.t01 (Vitis vinifera), 5'ss of exon 11
CAAGGGTGACATTGATTTTAAGCATGTCGGCTTCAAATACCCATCCCGTCCTGATGTTCAAATTTTCACTGACTTCACCTTAACCATTCCCTCTGGAAAGgtcaaaactataccagaaatctaatttgtcattcttctctcagttattatgaggactaaattttttatgccatcatttttctgaggtcttacacagaacccttttattgcag
 |||||||||||||| ||  |||||||| |||||||||| ||| |  | || ||||||||||||||||  |||||   ||| | ||| ||||| || ||||| |  |||    |     |     ||||| ||   || ||| ||  | |||     |||| ||||                                              
GAAGGGTGACATTGAGTTGCAGCATGTCAGCTTCAAATATCCAACAAGGCCAGATGTTCAAATTTTCAGAGACTTGTGCTTCAGCATCCCCTCCGGGAAGgtaatcacttccac-----tgctgcttgtcttttaactttcatttgct-tgacttgaaaatcttttgcag------------------------------------------