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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGTCATCGCTCTCTTCCTCTTCCTTTCCCCAGTgtaagtgctcgatgtagcgcccctcctcgatttcggtaaattgtgtcaacagggtcggagtgtgcgcaaaatcctagcaaatataaacattgttccagta...

Basic information

species Zea mays
transcript GRMZM2G153358_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153358_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g35140.1 (Oryza sativa), 5'ss of exon 2
GAAATGTCATCGCTCTCTTCCTCTTCCTTTCCCCAGTgtaagtgctcgatgt-agcgcccctcctcgatttcggtaaattgtgtcaacagg-gtcggagtgtgcgcaaaatcctagcaaatataaacattgttccagta
| ||||||||||| |||||||||||| | ||||||||||||||     | ||    ||  |||   |  |    |      ||  | | |   |     |      |   ||  ||   |||  || | || | |    
GCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGTgtaagtatcaaaagttgatgcatctcactgtctctcttttggactggtagctgttatatttataaagagagggtcaaagatgataagaaaagtggtgcca--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149075704|gb|EE164248.2|EE164248
EST:     GAAATGTCATCGCTCTCTTCCTCTTCCTTTCCCCAGT                         GCCTACGTTCTGGAGGATCATCAGGAGGAAGTCGACGGAGGATTTCTCGGG
genomic: GAAATGTCATCGCTCTCTTCCTCTTCCTTTCCCCAGTgtaagtgctc ... tggctcgcagGCCTACGTTCTGGAGGATCATCAGGAGGAAGTCGACGGAGGATTTCTCGGG