1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCAATCGAAAGATGTCGTCAAGGCACTGAAGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCGCTAACTgtaagtctatctgtggcttgccatttactcttaaatctaagtgcctttgtgactgtcaaagatttttgtcattttgtgttgtgcttccacaaaaccaaac...
species | Zea mays |
transcript | GRMZM2G153138_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCGCTAACT TTGTTGGAAACTGTTATTAAAAACTGTGGGGATATACTTCACATGCATGTTEST: gi|18655221|gb|BM500026.1|BM500026
genomic: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCGCTAACTgtaagtctat ... tctatttcagTTGTTGGAAACTGTTATTAAAAACTGTGGGGATATACTTCACATGCATGTC
EST: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCGCTAACT TTGTTGGAAACTGTTATTAAAAACTGTGGGGATATACTTCACATGCATGTTEST: gi|18662217|gb|BM501806.1|BM501806
genomic: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCGCTAACTgtaagtctat ... tctatttcagTTGTTGGAAACTGTTATTAAAAACTGTGGGGATATACTTCACATGCATGTC
EST: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCGCTAACT TTGTTGGAAACTGTTATTAAAAACTGTGGGGATATACTTCACATGCATGTTEST: gi|42491897|gb|CK700943.1|CK700943
genomic: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCGCTAACTgtaagtctat ... tctatttcagTTGTTGGAAACTGTTATTAAAAACTGTGGGGATATACTTCACATGCATGTC
EST: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCGCTAACT TTGTTGGAAACTGTTATTAAAAACTGTGGGGATATACTTCACATGCATGTC
genomic: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCGCTAACTgtaagtctat ... tctatttcagTTGTTGGAAACTGTTATTAAAAACTGTGGGGATATACTTCACATGCATGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAATCGAAAGATGTCGTCAAGGCACTGAAGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCGCTAACTgtaagtctatctgtggcttgccatttactcttaaatctaagtgcctttgtgactgtcaaagatttttgtcattttgtgttgtgcttccacaaaaccaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaccaa