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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTTAGTTCACATGTAAAACTCTTGCTATTTTAATACCACAGGCTGCTGATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACACgtaagtttgctcttcatacacaacctaacattaatctcttgtttgataaatcaatatactgaatgatacttaagatctctttgataaatatgatggagctgatgctaaaattacccccttgtgcag

Basic information

species Zea mays
transcript GRMZM2G152775_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152775_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g53060.1 (Oryza sativa), 5'ss of exon 3
GTTTTTAGTTCACATGTAAAACTCTTGCTATTTTAATACCACAGGCTGCTGATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACACgtaagtt-tgctcttcatac--acaacctaacattaatctcttgtttgataaatcaatatactgaatgatacttaagatctctttgataaatatgatggagctgatgctaaaattaccc-ccttgtgcag
                                            ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| | | ||| |  |  | |     |  || |        || ||| || | | | ||    | ||||  | |  |  |||||    | ||   || | |||||||| || ||| || | | |||
--------------------------------------------GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAACACACgtaagttgtccccttgaagcgaataggaagaagttgaatgaactcttcatatat-attgttctactagttactggaaacat--ttgatgtgcaagac--agttcatgctaaattttccctccattttcag

upper sequence: GRMZM2G152775_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g53060.2 (Oryza sativa), 5'ss of exon 3
GTTTTTAGTTCACATGTAAAACTCTTGCTATTTTAATACCACAGGCTGCTGATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACACgtaagtttgctcttcatacacaacctaacattaatctcttgtttgataaatcaatatactgaatgatacttaagatctctttgataaatatgatggagctgatgctaaaattacccccttgtgcag
                                            ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||  | | |       || | || |  ||    |||  |||    |  |||||     |                                                              
--------------------------------------------GCTGCTGATACACAAgtaatttccgattatgtacgctattttctccaccaacacacgtaagttgtccccttg-----aagcgaataggaagaagttgaatgaactcttcatatatattgt--------------------------------------------------------------

upper sequence: GRMZM2G152775_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g04800.1 (Oryza sativa), 5'ss of exon 3
GTTTTTAGTTCACATGTAAAACTCTTGCTATTTTAATACCACAGGCTGCTGATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACACgtaagtttgctctt---catacacaacctaac-attaat-----ctcttgtttgataaatcaatat---actgaatgat--------acttaagatctctttgataaatatgatgga---gctgatgctaaaattacccccttgtgcag----------------------------------
                                            ||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||    |   | ||  || | ||||||     ||| | ||     ||  |  ||   |||||||||         |  | |||| || || || || |   || |   |  | | ||   | ||    || |||||                                   
--------------------------------------------GCTGCCGACACACAAGTCATTTCGGAATATGTACGCTATTTTCTCCACCAACACACgtaagtttgttcttgtgtaattataatatatctattaatgctctctccttttaagctaagtaggatggcactgaatgaacaataataaacttagatttcattaattaacacagtgaactagtagttactgtgaatatttgct-gtgcaagatagcccatgctaaattttccctcgatttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32826830|gb|CD966508.1|CD966508
EST:     GATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACAC                         AATCCAGCTTGGACAACCAGCTACC
genomic: GATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACACgtaagtttgc ... ccttgtgcagAATCCAGCTTGGACAACCAGCTACC
EST: gi|32808848|gb|CD961082.1|CD961082
EST:     GATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACAC                         AATCCAGCTTGGACAACCAGCTACCGTTA
genomic: GATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACACgtaagtttgc ... ccttgtgcagAATCCAGCTTGGACAACCAGCTACCGTTA
EST: gi|32826298|gb|CD965976.1|CD965976
EST:     GATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACAC                         AATCCAGCTTGGACAACCAGCTACCGTTA
genomic: GATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACACgtaagtttgc ... ccttgtgcagAATCCAGCTTGGACAACCAGCTACCGTTA
EST: gi|76014048|gb|DT941218.1|DT941218
EST:     GATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACAC                         AATCCAGCTTGGACAACCAGCTACCGTTAAAAGT-GCAGCCAACTTGATTA
genomic: GATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACACgtaagtttgc ... ccttgtgcagAATCCAGCTTGGACAACCAGCTACCGTTAAA-GTTGCAGCCAACTTGATTA