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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCATGACTACAGGGGTGACGCGCTCGCGCAGCTGAGCCCGGTCCTGCGGAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagatcgcgcgtgtttttttcttcgatctggattaaggaacagattaggcatgcgaaagctgtaacgtattacatatcattgccatccttctactag

Basic information

species Zea mays
transcript GRMZM2G152477_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152477_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g13540.1 (Oryza sativa), 5'ss of exon 3
AACCATGACTACAGGGGTGACGCGCTCGCGCAGCTGAGCCCGGTCCTGCGGAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaaga------tcgcgcgtgtttttttcttcgatctg--gattaaggaacagatta-ggcatgcgaa--agctgtaac---gtattacatatcattgccatccttctactag
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AATCATGACTACAGGGGTGATGTGCTAGCACAGCTTAGCCCAGTCTTGCGAAAGATCGACCAGCGATTCATTTGCATGAGGTCGTTCATTGTTAATGCAGgtaggaaaaaaaatgcagtatttggttactacttggatatgatgatagagttctgaactgtaacgtgcaaaacaacgctaactttgtatgatctgtcatcaacctttttttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32844410|gb|CD984091.1|CD984091
EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGT
EST: gi|37426126|gb|CF650813.1|CF650813
EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: gi|74244004|gb|DT651918.1|DT651918
EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTTCA-CTCAAGTAC
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTT-CAACTCAAGTAC
EST: gi|32845060|gb|CD984741.1|CD984741
EST:     GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTA
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTA
EST: gi|37393857|gb|CF634195.1|CF634195
EST:     TCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: TCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: gi|19821796|gb|BQ047820.1|BQ047820
EST:     GAAGATCGACAGCCGGTTCATCTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: gi|17970297|gb|BM277060.1|BM277060
EST:     GAAGATCGACAGCCGGTTCATCTGCATCAAATCATTCGTCGTCAACGCAG                         AAATCGTGGAGTTCTTCTTCGTTGACACCACC
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACC