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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGACTACTGGAATTTGACGCCTCCGTGGTGAACTGCAGGGCGGCGAGGTGCCGGTGATCGAGACGCTGGGCACGTTCGCGCTCTCCGTCGGGGCGGCGgtacgcggcgctcctcgacgtccttttctgacgcgcatgcaagcagatcgattggggcctgctgatttcgctggtcgcgtgcgtgcag

Basic information

species Zea mays
transcript GRMZM2G152135_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152135_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g48880.1 (Oryza sativa), 5'ss of exon 2
CTGGACTACTGGAATTTGACGCCTCCGTGGTGAACTGCAGGGCGGCGAGGTGCCGGTGATCGAGACGCTGGGCACGTTCGCGCTCTCCGTCGGGGCGGCGgtacgcggc----gctcctcgacgtccttttctga-cgcgcat---gcaagcagatcgattggggcctgct-gatttcgctggtcgcgtgcgtgcag---
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----------------------------------------GGCGGGGATGTGCCGATGACCGAGATGTTTGGCACGTTTGCGCTCTCCGTCGGCGCAGCGgtaagcggccgtgacaccgcaaaatccctgtttgctcgctgataacgtccttgggatgtcaaaattttgcttaattttgacgctcgctggggggttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211062532|gb|FL481127.1|FL481127
EST:     TCCGTCGGGGCGGCG                         GTCGGGATGGAGTTTC-GGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGC
genomic: TCCGTCGGGGCGGCGgtacgcggcg ... gtgcgtgcagGTCGGGATGGAG-TTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGC
EST: gi|211081393|gb|FL128737.1|FL128737
EST:     ATCGAGACGCTGGGCACGTTCGCGCTCTCCGTCGGGGCGGCG                         GTCGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCC
genomic: ATCGAGACGCTGGGCACGTTCGCGCTCTCCGTCGGGGCGGCGgtacgcggcg ... gtgcgtgcagGTCGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCC
EST: gi|149107956|gb|EE292313.2|EE292313
EST:     TGCCGGTGATCGAGACGCTGGGCACGTTCGCGCTCTCCGTCGGGGCGGCG                         GTCGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCC
genomic: TGCCGGTGATCGAGACGCTGGGCACGTTCGCGCTCTCCGTCGGGGCGGCGgtacgcggcg ... gtgcgtgcagGTCGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCC