1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGTGCCCTCTGGGGAAAGCTGGCAGCAGAAATCCTAATGCAGAACTGGGACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaacttcaatgttttgttctgtgttctttgttctttgtgtacactatatcaccaaccatgttccttcctgatctttgggcag
species | Zea mays |
transcript | GRMZM2G151549_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAG AACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATEST: gi|149086591|gb|EE176135.2|EE176135
genomic: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaactt ... ctttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
EST: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAG AACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATEST: gi|148945927|gb|EC891220.2|EC891220
genomic: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaactt ... ctttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
EST: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAG AACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATEST: gi|71772604|gb|DR970532.1|DR970532
genomic: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaactt ... ctttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
EST: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAG AACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATEST: gi|211543296|gb|FL204964.1|FL204964
genomic: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaactt ... ctttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
EST: CGTAGCTTTGGAGGAAACTCA-CCGCTTGAAGGAAATAATTGATTCAAAG AACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATEST: gi|148932020|gb|EC875324.2|EC875324
genomic: CGTAGCTTTGGAGGAA-CTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaactt ... ctttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
EST: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAG AACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATEST: gi|148942799|gb|EC887829.2|EC887829
genomic: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaactt ... ctttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
EST: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAG AACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
genomic: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaactt ... ctttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGCCCTCTGGGGAAAGCTGGCAGCAGAAATCCTAATGCAGAACTGGGACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaacttcaatgttttgttctgtgttctttgttctttgtgtacactatatcaccaaccatgttccttcctgatctttgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA