1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAGAGGAGGATCGGGTGATGGAGAATGATGATGGCGGTAATCCTGCTTTGCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgcctttcgaatgtgctgactaatcggttgtttcaaatatgcccgcagaagccaaagcttgtctctggttcgctatcaaaacaaaagagagggagag...
species | Zea mays |
transcript | GRMZM2G151268_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAG GTAGGTTACTAACTGCACTTGTTTGCKAATACTTGGAGTGGGCGCAATTWAEST: gi|9028689|gb|BE238729.1|BE238729
genomic: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgccttt ... ttgcttgcagGTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
EST: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAG GTAGGTTACTAACTGCACTTGGTTGCGAATACTTGGAGTGGGCGCAATTAAEST: gi|211029306|gb|FL370361.1|FL370361
genomic: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgccttt ... ttgcttgcagGTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
EST: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAG GTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAAEST: gi|211511056|gb|FL378831.1|FL378831
genomic: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgccttt ... ttgcttgcagGTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
EST: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAG GTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAAEST: gi|29945213|gb|CB815527.1|CB815527
genomic: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgccttt ... ttgcttgcagGTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
EST: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAG GTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAAEST: gi|74239381|gb|DT647295.1|DT647295
genomic: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgccttt ... ttgcttgcagGTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
EST: GCTTGGTAGCTGTAATGCCCGGGCTAAGCAACTGCATGCTTCACCTTCAG GTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAAEST: gi|211355840|gb|FL403701.1|FL403701
genomic: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgccttt ... ttgcttgcagGTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
EST: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAG GTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAAEST: gi|211317656|gb|FL416767.1|FL416767
genomic: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgccttt ... ttgcttgcagGTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
EST: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAG GTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAAEST: gi|211533628|gb|FL412545.1|FL412545
genomic: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgccttt ... ttgcttgcagGTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
EST: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAG GTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAAEST: gi|211156585|gb|FL395419.1|FL395419
genomic: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgccttt ... ttgcttgcagGTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
EST: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAG GTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAAEST: gi|211036668|gb|FL370397.1|FL370397
genomic: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgccttt ... ttgcttgcagGTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
EST: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAG GTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAAEST: gi|74239382|gb|DT647296.1|DT647296
genomic: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgccttt ... ttgcttgcagGTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
EST: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAG GTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAAEST: gi|211254949|gb|FL427088.1|FL427088
genomic: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgccttt ... ttgcttgcagGTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
EST: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAG GTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAAEST: gi|9952754|gb|BE639217.1|BE639217
genomic: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgccttt ... ttgcttgcagGTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
EST: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAG GTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAAEST: gi|211163025|gb|FL401335.1|FL401335
genomic: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgccttt ... ttgcttgcagGTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
EST: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAG GTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAAEST: gi|211076740|gb|FL399053.1|FL399053
genomic: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgccttt ... ttgcttgcagGTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
EST: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAG GTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAAEST: gi|211537120|gb|FL426924.1|FL426924
genomic: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgccttt ... ttgcttgcagGTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
EST: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAG GTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
genomic: GCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgccttt ... ttgcttgcagGTAGGTTACTAACTGCACTTGTTTGCGAATACTTGGAGTGGGCGCAATTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAGGAGGATCGGGTGATGGAGAATGATGATGGCGGTAATCCTGCTTTGCTTGGTAGCTGTAATGACCGGGCTAAGCAACTGCATGCTTCACCTTCAGgtttgcctttcgaatgtgctgactaatcggttgtttcaaatatgcccgcagaagccaaagcttgtctctggttcgctatcaaaacaaaagagagggagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
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