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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCTGGACCATATGGCACTTTCGTTGGTGTTTACGATGGGCATGGTGGTCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAAgtaacttgctaacctttaaatctgtgcagtagcactattcccgtttcttagcactatatctgcatttggctttcagtttgcacataaaggagatcatccattttttcatggcttgtatttag

Basic information

species Zea mays
transcript GRMZM2G151254_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151254_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g50380.3 (Oryza sativa), 5'ss of exon 2
GATTCTGGACCATATGGCACTTTCGTTGGTGTTTACGATGGGCATGGTGGTCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAAgtaacttgctaacctttaaatctgtgcagtagcactattcccgtttcttagcactatatctgcatttggctttcagtttgcacataaaggagatcatccattttttcatggcttgtatt-tag-----------------
|| ||||| ||||| || |||||||| || ||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| || |||||  ||||||||||||| ||| ||     | |   | |||| |||   | ||           ||||||  ||   | |  | |||      |||  |  | ||     | |||| || |||||||| ||||  ||                 
GACTCTGGTCCATACGGAACTTTCGTCGGGGTTTATGATGGACATGGTGGCCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaa-ttgata----ctgacagtatgcactagtgttgtttt---------gcactacttccatactgtgttttaga---gcaattccatgaccat-ttcattcttccatggcttatattgcagggtttgcatctgaacag

upper sequence: GRMZM2G151254_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g50380.1 (Oryza sativa), 5'ss of exon 3
GATTCTGGACCATATGGCACTTTCGTTGGTGTTTACGATGGGCATGGTGGTCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAAgtaacttgctaacctttaaatctgtgcagtagcactattcccgtttcttagcactatatctgcatttggctttcagtttgcacataaaggagatcatccattttttcatggcttgtatt-tag
|| ||||| ||||| || |||||||| || ||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| || |||||  ||||||||||||| ||| ||     | |   | |||| |||   | ||           ||||||  ||   | |  | |||      |||  |  | ||     | |||| || |||||||| ||||  ||
GACTCTGGTCCATACGGAACTTTCGTCGGGGTTTATGATGGACATGGTGGCCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaa-ttgata----ctgacagtatgcactagtgttgtttt---------gcactacttccatactgtgttttaga---gcaattccatgaccat-ttcattcttccatggcttatattgcag

upper sequence: GRMZM2G151254_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv03s0038g02650.t01 (Vitis vinifera), 5'ss of exon 2
GATTCTGGACCATATGGCACTTTCGTTGGTGTTTACGATGGGCATGGTGGTCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAAgtaacttgcta-acctttaaatctgtgcagtagcactattcccgtttcttagcactatatctgcatttggctttcagtttgcacataaaggagatcatccattttttcatggcttgtatttag
|| ||||| || ||||| || || |||||  |||| |||||||||||||| || ||||||||| | || ||||||||||| || |||||  |||| || ||||| || ||  | || ||   |  |   | |   | |||    |||||||||        |||||| |||| |   | |  |    || ||  |     |  |    |  |           
GAGTCTGGCCCTTATGGTACCTTTGTTGGAATTTATGATGGGCATGGTGGACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttactgcaactgtattgcaatttggaacttcaatt----tttcttagc--------tgcatt-ggctgtatatgtttatggtaaagaattttcttacctgccaaccgg----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32852290|gb|CD991971.1|CD991971
EST:     TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAA                         GATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCAT
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCAT
EST: gi|211023333|gb|FL324506.1|FL324506
EST:     TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAA                         GATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAACAACGCAT
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCAT
EST: gi|74233717|gb|DT641631.1|DT641631
EST:     TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAA                         GATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCAT
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCAT
EST: gi|211480401|gb|FL326620.1|FL326620
EST:     TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAA                         GATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCAT
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCAT
EST: gi|13237156|gb|BG355170.1|BG355170
EST:     TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAA                         GATTTGCATCTGAGCAGAATGC
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGATTTGCATCTGAGCAGAATGC
EST: gi|71300865|gb|DR786463.1|DR786463
EST:     TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAA                         GATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCAT
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCAT