1 5' 3' | 2 5' 3' | 3 5' 3' |
CCGCACCCACTTCGGTGGAGGCAAGTCCACTGGCTTCGGCCTCATCTACGATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtcgcctggcccttgctttcgttacctgtagctatgatgttataaacgcttgattatatatacgatgttataaacgcttgattatataagttt...
species | Zea mays |
transcript | GRMZM2G151252_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|32911428|gb|CF016240.1|CF016240
genomic: CGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|37384104|gb|CF629099.1|CF629099
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|4837551|gb|AI670641.1|AI670641
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTGGAGCCCAAATGCCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|32864175|gb|CF003857.1|CF003857
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: GCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|29543821|gb|CB604201.1|CB604201
genomic: GCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|6695450|gb|AW288558.1|AW288558
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|29543742|gb|CB604122.1|CB604122
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|166421287|gb|EG152350.1|EG152350
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: CTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|19351052|gb|BM895584.1|BM895584
genomic: CTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|21331260|gb|BQ486641.1|BQ486641
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: CTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|8930253|gb|BE225017.1|BE225017
genomic: CTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|31558071|gb|CD527283.1|CD527283
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|33101619|gb|CF061579.1|CF061579
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|29544175|gb|CB604555.1|CB604555
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|32849324|gb|CD989005.1|CD989005
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|17921705|gb|BM259356.1|BM259356
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|28873677|gb|CB329632.1|CB329632
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGT-GAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|33092128|gb|CF052122.1|CF052122
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|87152088|gb|DY396877.1|DY396877
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|28987571|gb|CB351700.1|CB351700
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|32923426|gb|CF028238.1|CF028238
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|211338906|gb|FL394233.1|FL394233
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: AGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|32923248|gb|CF028060.1|CF028060
genomic: AGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|32911429|gb|CF016241.1|CF016241
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGGCAAATGAAAGAGCGEST: gi|32929003|gb|CF033815.1|CF033815
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAA-GCAAATGAAAGAGCG
EST: CCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|29543417|gb|CB603813.1|CB603813
genomic: CCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|211400402|gb|FL382669.1|FL382669
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAGTGAAAGAGCGGEST: gi|33095068|gb|CF055062.1|CF055062
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGGCAAATGAAAGAGCGEST: gi|211422660|gb|FL460763.1|FL460763
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAG-CAAATGAAAGAGCG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|19436140|gb|BM952550.1|BM952550
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|60353225|gb|DN220198.1|DN220198
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|33091287|gb|CF051281.1|CF051281
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|71774798|gb|DR972676.1|DR972676
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGEST: gi|14701101|gb|BI233519.1|BI233519
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
EST: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGG AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
genomic: ATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtc ... gtattgccagAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCACCCACTTCGGTGGAGGCAAGTCCACTGGCTTCGGCCTCATCTACGATAACCTCGAGTCTGCCAAGAAGTTCGAGCCCAAATACCGCCTCATCAGGgtatgttgtcgcctggcccttgctttcgttacctgtagctatgatgttataaacgcttgattatatatacgatgttataaacgcttgattatataagttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT