1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggttttttcacacaaaaggccgatttaggttttctttctagggccgatgcttctgtagctcctgatttataatctatatagaccgaattgcaagtt...
species | Zea mays |
transcript | GRMZM2G150867_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|211541025|gb|FL000900.1|FL000900
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGNNGAGGGTTAGAGTAGAACTGCCAGATGCEST: gi|211541026|gb|FL000901.1|FL000901
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATG--GAGGGTTAGAGTAGAACTGCCAGATGC
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|15499388|gb|BI595901.1|BI595901
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|211541022|gb|FL000897.1|FL000897
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|87157692|gb|DY402481.1|DY402481
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|33103947|gb|CF063907.1|CF063907
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|12971358|gb|BG267442.1|BG267442
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: TTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|23199807|gb|BU582372.1|BU582372
genomic: TTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|211541028|gb|FL000903.1|FL000903
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGCCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|211541020|gb|FL000895.1|FL000895
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|5439433|gb|AI820354.1|AI820354
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|211541021|gb|FL000896.1|FL000896
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: GAACGATGGGATCCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|211541018|gb|FL000893.1|FL000893
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|84980137|gb|DW530486.1|DW530486
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|6223825|gb|AW154956.1|AW154956
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|37394410|gb|CF634479.1|CF634479
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|5455873|gb|AI833563.1|AI833563
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|32911041|gb|CF015853.1|CF015853
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTEST: gi|211541027|gb|FL000902.1|FL000902
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggttttttcacacaaaaggccgatttaggttttctttctagggccgatgcttctgtagctcctgatttataatctatatagaccgaattgcaagtt
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