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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATTCCTCCAAATCTCACAAGTGAGGAGTGGACAGCTGCGTTGCCAAGGGCACTAGTTGCTGGTTTTGTAAAAACGGATAAAGACTTCCAAACAAAAGgtattataaatgggttgtcagatctgcctgtccgttaaccattcaaaagcaaattatttctcagtggatgtccaatgtttacaggagcatacagcatttgctgtttaccatggatagaggatgattttagcctcctatatatcatggagtcctcagactgtttcactgtgatgtaaactgactataatgttttcag

Basic information

species Zea mays
transcript GRMZM2G150213_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150213_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g27780.1 (Oryza sativa), 5'ss of exon 2
GCTATTCCTCCAAATCTCACAAGTGAGGAGTGGACAGCTGCGTTGCCAAGGGCACTAGTTGCTGGTTTTGTAAAAACGGATAAAGACTTCCAAACAAAAGgtattataaatgggttgtcagatctgcctgtccgttaaccattcaaaagcaaattatttctcagtggatgtccaatgtttacaggagcatacagcatttgctgtttaccatggatagaggatgattttagcctcctatatatcat-ggagtcctcagactgtttcactgtgatgtaaactgactataa---tgttttcag
|||||||| |||||||| |||||||||||||||||| |||| || || |||||||||||||| |||||||| || || |||||||| ||||||||||||||||||||        | |||      |    | | |||| ||| | | |      || |      |    |   |  |||    |  ||||       | ||        |||| | |      | | |       ||| || ||  | ||  | | ||  || ||||| | |||||||||| | | |   |||||||||
GCTATTCCCCCAAATCTTACAAGTGAGGAGTGGACAACTGCATTACCGAGGGCACTAGTTGCAGGTTTTGTTAAGACAGATAAAGAGTTCCAAACAAAAGgtattatt------ctttca------ctaagctgataacgatttagaggatgtgcatgtaatttagaggcttttagttttctttgttcata-------ttctcccccttttggacaaatatctttctgatttatgaatacatgatcagtgttgttatacacttgcactgcggtgtaaactgattgttaccatgttttcag

upper sequence: GRMZM2G150213_T04 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA17G36150.2 (Glycine max), 5'ss of exon 2
GCTATTCCTCCAAATCTCACAAGTGAGGAGTGGACAGCTGCGTTGCCAAGGGCACTAGTTGCTGGTTTTGTAAAAACGGATAAAGACTTCCAAACAAAAGgtatt-ataa---atgggttgtcagatctgc-ctgtccgttaaccattcaaaagcaaattatttctcagtggatgtccaatgtttacaggagcatacagcatttgctgtttaccatggatagaggatgattttagcctcctatatatcatggagtcctcagactgtttcactgtgatgtaaactgactataatgttttcag
|| ||||||||| |||| |  || || ||||||| ||| || ||||| |||||  | |||||||||||||||||||| |||||||| || |||   ||||||||  |||    ||   || |    | ||| |||||  ||     || |  |   ||||  |   || |     |  ||| || |    |  || || ||                                                                                                    
GCGATTCCTCCAGATCTTAACAGAGATGAGTGGATAGCAGCCTTGCCCAGGGCTTTGGTTGCTGGTTTTGTAAAAACTGATAAAGATTTTCAAGAGAAAGgtatggatagttcattccttttggtgtttgctctgtcaattttttgtttacgatggaattcatgtacattaac--ttaaatcttcatgtcaatat-caccaaa--------------------------------------------------------------------------------------------------