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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGATACGAACAATGTCTTGCAGAGTTGGGATTCCACTCTTGTTAATCCATGTACATGGTTTCACGTTACGTGTAACAGCGATAACAGTGTTATCAGAGTgtaagtcgatgaaaaagctctcatatattcatttcaaagtgttagtgatgttctccttctggttctaaatgtccccactttcacag

Basic information

species Zea mays
transcript GRMZM2G150024_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150024_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA02G08360.1 (Glycine max), 5'ss of exon 1
TAGATACGAACAATGTCTTGCAGAGTTGGGATTCCACTCTTGTTAATCCATGTACATGGTTTCACGTTACGTGTAACAGCGATAACAGTGTTATCAGAGTgtaagtcg-atga-----aaaagctctcatatat----tcatttcaaagtgttag----tgatgttctccttctggttctaaatgtccccactttcacag-----------
  ||| | |||||||| ||||| ||||||||  | || || || |||||||| ||||||||||| || || || ||||  ||||| ||||| || ||||||||||  | |||       | | || |||||| |    || ||    | |  ||     |  | |  || |  |  || | |||||   |  |      |           
AGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACACTGGTCAATCCATGCACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTgtaagctgcatgtcctttgagatctgtcatatttattttcgttctgtatttatacagcttagtttcatcttcttcttttttaatgtgttctttcctttggtttaatatcag

upper sequence: GRMZM2G150024_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA20G31320.1 (Glycine max), 5'ss of exon 2
TAGATACGAACAATGTCTTGCAGAGTTGGGATTCCACTCTTGTTAATCCATGTACATGGTTTCACGTTACGTGTAACAGCGATAACAGTGTTATCAGAGTgtaagtcgatga------aaaagctctcatatattcatttcaaagtgttagtgatgttctccttctggttctaaatgtccccactttcacag---------------------------
  ||| | |||||||| ||||| ||||||||| | || |||||||||||||||||||||||||| || || || ||||  ||||| ||||| || ||||||||||| | |         | | || ||| || ||||||     || | |  |   |  |     ||    | | |   |  || ||  |                             
AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTTAATCCATGTACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTgtaagttgcttgttccttgatatctgtcacatgttcattct---gtctgaacggcttcttttaattgaggatgacttctctaacgtttgcttgtgatctttactttgcttggttgtcag

upper sequence: GRMZM2G150024_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA10G36280.1 (Glycine max), 5'ss of exon 2
TAGATACGAACAATGTCTTGCAGAGTTGGGATTCCACTCTTGTTAATCCATGTACATGGTTTCACGTTACGTGTAACAGCGATAACAGTGTTATCAGAGTgtaagtcgatga------aaaagctctcatatattcatttcaaagtgttagtgatgttctccttctggttctaaatgtccccactttcacag---------------------------
  ||| | |||||||| ||||| ||||||||| | || ||||| ||||| |||||||||||||| || || || ||||  ||||| ||||| || ||||||||||| | |         | | || |||  | ||| ||     |  | |      |  |      |    | | |   |  |  ||  |                             
AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTCAATCCCTGTACATGGTTTCATGTGACATGCAACAATGATAATAGTGTCATAAGAGTgtaagttgcttgttcctggatatctgtcacgtgttctttct---gcctgaacagcttcttttaatcgaggatgacttctctaatgtttgcgtgtgatctttactttgctcggttgtcag

upper sequence: GRMZM2G150024_T03 (Zea mays), 5'ss of exon 2
lower sequence: AT1G71830.1 (Arabidopsis thaliana), 5'ss of exon 2
TAGATACGAACAATGTCTTGCAGAGTTGGGATTCCACTCTTGTTAATCCATGTACATGGTTTCACGTTACGTGTAACAGCGATAACAGTGTTATCAGAGTgtaagtcgatgaaaaagctctcatatattcatttcaaagtgttagtgatgttctccttctggttctaaatgtccccactttcacag----------
| ||| | ||||||||||||||||| |||||| | || || || ||||| || |||||||| || || || || |||| ||| |||||||| || |||||||||           |||| || | || | ||  ||   | | |    ||  |||    |||||    |  |      ||     |          
TTGATCCAAACAATGTCTTGCAGAGCTGGGATCCTACGCTAGTGAATCCTTGCACATGGTTCCATGTCACTTGCAACAACGAGAACAGTGTCATAAGAGTgtaa-----------agctttcttctactaatcccactttttaaactttgacctcagcgtggttaccgacatttttgtttcttttgtcaaatacag

upper sequence: GRMZM2G150024_T03 (Zea mays), 5'ss of exon 2
lower sequence: AT1G34210.1 (Arabidopsis thaliana), 5'ss of exon 2
TAGATACGAACAATGTCTTGCAGAGTTGGGATTCCACTCTTGTTAATCCATGTACATGGTTTCACGTTACGTGTAACAGCGATAACAGTGTTATCAGAGTgtaagtcgatgaaaaagctctcatatattcatttcaaagtgttagtgatgttctccttctggttctaaatgtccccactttcacag
| ||| | || ||||||||||| || |||||| | || ||||||||||| ||||| ||||||||||| |||||||||| ||| ||||||||||| ||||||| |||   |      |||   |  |   |    ||| ||  |  || |   ||  ||     |||   |||     |||   |||
TTGATCCAAATAATGTCTTGCAAAGCTGGGATCCTACGCTTGTTAATCCGTGTACTTGGTTTCACGTAACGTGTAACAACGAGAACAGTGTTATAAGAGTgtgagt--gtctctctgcttatacctgacctgaccaatgttctt-tgtttagcttatttaatctctgtttgttgttgcttcttcag

upper sequence: GRMZM2G150024_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 2
TAGATACGAACAATGTCTTGCAGAGTTGGGATTCCACTCTTGTTAATCCATGTACATGGTTTCACGTTACGTGTAACAGCGATAACAGTGTTATCAGAGTgtaagtcgatg-------aaaaagctctcatatattcatttcaaagtgttagtgatgttctccttctg------gttctaaatgtccccactttc-acag----------
  ||  | ||||||||| | |||||||||||| | || ||||| || || || ||||||||||| ||||| || || || ||||| |||||||| ||||||||||  | |        | |   ||  ||| || |   |         | ||||  | ||   ||        |  ||  |||      ||||| | |           
AGGACCCAAACAATGTCCTACAGAGTTGGGATCCGACCCTTGTCAACCCCTGCACATGGTTTCATGTTACCTGCAATAGTGATAATAGTGTTATAAGAGTgtaagcagctttcccttcatacgtcttccatttactggctcagtgtaacttgtgaattgcttgatccatgaaacgccctgtatgatgttgctttccatatattttcacag

upper sequence: GRMZM2G150024_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 2
TAGATACGAACAATGTCTTGCAGAGTTGGGATTCCACTCTTGTTAATCCATGTACATGGTTTCACGTTACGTGTAACAGCGATAACAGTGTTATCAGAGTgtaagtcgatgaaaaagctctcatatattcatttcaaagtgttagtgatgttctcc-ttctggttct-aaatgtccccactttcacag--------------------------------------------------
 |||| | ||||||||  |||||||||||||| | || || || || ||||| ||||||||||| || || |||||||  || || |||||||| ||||||||||   ||       |||    |||    ||   | ||    |  ||||| |   || |||     ||||||      |||  ||                                                   
AAGATCCTAACAATGTGCTGCAGAGTTGGGATCCTACGCTAGTGAACCCATGCACATGGTTTCATGTCACATGTAACAATGAAAATAGTGTTATAAGAGTgtaagctaattt----cctcgttgatagcttttgtgatgtacatgcaatgttgtaaattgtggcaaagaaatgtagaagttttatcaaattctaactggtgtctcacatgaatgagttgattttcgtgtcttcatcag