1 5' 3' | 2 5' 3' | 3 5' 3' |
GATCATCATAAATCTGCTGTCAAGACGTCTGGAAGAGGGAGAGGAAAAGGGTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCGgtgagctaattatttgacctgaccgtaagtatgcagcaaaaacacatacttgcctcttatcaggaagcatttttcacttgcatcttcttttgagttctta...
species | Zea mays |
transcript | GRMZM2G150014_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCG GAGATACTTGAAGGAGTCACAGACATTGATTTAGTGATCAATCTCAAACTCEST: gi|78088919|gb|DV517312.1|DV517312
genomic: GTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCGgtgagctaat ... gccctgtcagGAGATACTTGAAGGAGTCACAGACATTGATTTGGTGATCAATCTCAAACTC
EST: GTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCG GAGATACTTGAAGGAGTCACAGACATTGATTTGGTGATCAATCTCAAACTCEST: gi|60337215|gb|DN204188.1|DN204188
genomic: GTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCGgtgagctaat ... gccctgtcagGAGATACTTGAAGGAGTCACAGACATTGATTTGGTGATCAATCTCAAACTC
EST: GTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCG GAGATACTTGAAGGAGTCACAGACATTGATTTGGTGATCAATCTCAAACTCEST: gi|9255053|gb|BE345521.1|BE345521
genomic: GTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCGgtgagctaat ... gccctgtcagGAGATACTTGAAGGAGTCACAGACATTGATTTGGTGATCAATCTCAAACTC
EST: GTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCG GAGATACTTGAAGGAGTCACAGACATTGATTTGGTGATCAATCTCAAACTCEST: gi|15632388|gb|BI679481.1|BI679481
genomic: GTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCGgtgagctaat ... gccctgtcagGAGATACTTGAAGGAGTCACAGACATTGATTTGGTGATCAATCTCAAACTC
EST: GTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCG GAGATACTTGAAGGAGTCACAGACATTGATTTGGTGATCAATCTCAAACTCEST: gi|101388897|gb|EB816430.1|EB816430
genomic: GTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCGgtgagctaat ... gccctgtcagGAGATACTTGAAGGAGTCACAGACATTGATTTGGTGATCAATCTCAAACTC
EST: GTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCG GAGATACTTGAAGGAGTCACAGACATTGATTTGGTGATCAATCTCAAACTCEST: gi|9255025|gb|BE345493.1|BE345493
genomic: GTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCGgtgagctaat ... gccctgtcagGAGATACTTGAAGGAGTCACAGACATTGATTTGGTGATCAATCTCAAACTC
EST: TCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCG GAGATACTTGAAGGAGTCACAGACATTGATTTGGTGATCAATCTCTTTCTCEST: gi|60345933|gb|DN212906.1|DN212906
genomic: TCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCGgtgagctaat ... gccctgtcagGAGATACTTGAAGGAGTCACAGACATTGATTTGGTGATCAATCTCAAACTC
EST: GTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCG GAGATACTTGAAGGAGTCACAGACATTGATTTGGTGATCAATCTCAAACTCEST: gi|101388895|gb|EB816429.1|EB816429
genomic: GTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCGgtgagctaat ... gccctgtcagGAGATACTTGAAGGAGTCACAGACATTGATTTGGTGATCAATCTCAAACTC
EST: GTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCG GAGATACTTGAAGGAGTCACAGACATTGATTTGGTGATCAATCTCAAACTC
genomic: GTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCGgtgagctaat ... gccctgtcagGAGATACTTGAAGGAGTCACAGACATTGATTTGGTGATCAATCTCAAACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCATCATAAATCTGCTGTCAAGACGTCTGGAAGAGGGAGAGGAAAAGGGTGAATTGGGGTTCATCCTTGATGGCTTTCCTCGAACCATAGGACAAGCGgtgagctaattatttgacctgaccgtaagtatgcagcaaaaacacatacttgcctcttatcaggaagcatttttcacttgcatcttcttttgagttctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcaaaaa