Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTGACAGGAGGATCTACCTGCCGGATGGGCTCTTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcacatcactccaactttgccttccataaaggtttttgcttgtttcagaaattctagattccagttggtagtttaatgaaatcaggttagcgcta...

Basic information

species Zea mays
transcript GRMZM2G149428_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149428_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g13890.2 (Oryza sativa), 5'ss of exon 2
GTCCTGACAGGAGGATCTACCTGCCGGATGGGCTCTTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcacatcactccaactttgccttccataaaggtttttgcttgtttcagaaattctagattccagttggtagtttaa--tgaaatcaggttagcgcta
| |||||||||||||||| | ||||||| || ||| |||||||||| ||||| ||||| ||||||| |||||||||||| |||||||||||||||     |||  |||  ||  | |    | | | | ||     | ||| | |||||     |  || |   ||    | | |   ||   |  |
GCCCTGACAGGAGGATCTTCTTGCCGGAGGGTCTCCTGGACCGCTCAGAGGTGCCGGACTACCTCAACGGAGAGGTCCCCGGAGAgtaagtcacaagctcccatttttcgctgtctttt--gctgtagtttcaagaaaaaagtttagatctttttgtgtggaaaaaatccagacctttttgtaggca

upper sequence: GRMZM2G149428_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G33030.1 (Glycine max), 5'ss of exon 2
GTCCTGACAGGAGGATCTACCTGCCGGATGGGCTCTTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagt-cacatcact------ccaactttgccttccataaaggtttttgc--ttgtttcagaaattct-----agattccagttggtagtttaatgaaatcaggttagcgcta---------
|||||||||| ||||||| | |||| || || ||||||||||| || ||| | || |||||| | |||||||| ||||| |||||||| || | | || ||      |||  |||   |  ||| ||  |    ||  ||     |  | |  |     || ||   | |  | |||| |   |||  ||| |    |          
GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCTGAGATCCCAGAGTACTTGACCGGAGAAGTCCCCGGAGAgtatgttctcctctcttatagtccacttttagttcacattaacatgcaagccattaaacaaacagtgtttgtgaagttttttggttcttgttttacttaatttggtaatgtgtgtccatgcag

upper sequence: GRMZM2G149428_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA10G32080.1 (Glycine max), 5'ss of exon 2
GTCCTGACAGGAGGATCTACCTGCCGGATGGGCTCTTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtca---catcactccaactt---tgccttccata--aaggtttttgcttgtttcagaaattctagattccagttggtagtttaatgaaatcaggttagcgcta--------------------------------------------
|||||||||| ||||||| | |||| || || ||||||||||| || ||| | || |||||| | |||||||| || ||||||||||| |||    |||| ||| |  ||   |  ||| |||   |    | |   |    |  ||| |  |  |||  |      |  ||| ||||||     ||  | |                                             
GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCTGAGATCCCCGAGTACTTGACCGGAGAAGTGCCTGGAGAgtatgtcttttcatctctctagtttccttttctttcatgctacaactctcattgacatgtgaactattgaattgaaaacttgatattactgaaatgtttataatgtttaatccttattgttaggtctaatttgttgattttcatgcctgcag

upper sequence: GRMZM2G149428_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA20G35530.1 (Glycine max), 5'ss of exon 2
GTCCTGACAGGAGGATCTACCTGCCGGATGGGCTCTTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaag----tcacatcactccaactt---tgccttccata--aaggtttttgcttgtttcagaaattctagattccagttggtagt-----ttaatgaaatcaggttagcgcta---------------------------------
|||||||||| ||||||| | |||| || || ||||||||||| || ||| | || |||||| | |||||||| || ||||||||||| |    |  |||| ||| |  ||   |  ||| |||   |    | |   |    |  ||| |  |  |  |  | || || |     || ||    |    ||   | |                                  
GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGATCCCCGAGTACTTGACCGGAGAAGTGCCTGGAGAgtatggtgttttcatctctctagtttccttttctttcatgctacaactctcattgacatgtgaactattgaaaacttgatgttactgaatgtttatagtgttcaattcttgttgctttgtttgatttgctgatctgcatgcctgcag

upper sequence: GRMZM2G149428_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA09G28200.1 (Glycine max), 5'ss of exon 3
GTCCTGACAGGAGGATCTACCTGCCGGATGGGCTCTTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagt-----cacatcactccaactttgccttccataaaggtt--tttgcttgtt-tcagaaattctagattcc---agttggtagtttaatga---aatcaggttagcgcta-------------
|||||||||| ||||||| | |||| || || ||||||||||| || ||  | || |||||| | |||||||| |||||||||||||| ||     | | || ||   | |   | ||  ||  |  ||    |||| ||  | | | |  | |  ||     ||||  | | ||  ||    | | |  || |   |              
GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCCGAAATCCCAGAGTACTTGACCGGAGAAGTCCCTGGAGAgtatgtggattctcctctcttatagtccacttttaattcacattaacatgctagtcattaaacaaacaatgtttgtgaagttttttggttcttgttttacttaatttggtaatgtgtgtccatgcag

upper sequence: GRMZM2G149428_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S6_312V6.2 (Physcomitrella patens), 5'ss of exon 2
GTCCTGACAGGAGGATCTACCTGCCGGATGGGCTCTTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcacatc-actccaactttgccttccataaaggtttttgcttgtttcagaaattctagattccagttggtagtttaatgaaatcaggttagcgcta--------------------------------------------
|||| || ||||||||||||||||| || || || ||||        ||| | || |||||||| |||||||||||||| |||||||||||  |  | |||   |   |   |   |  | ||  || |   |||  ||      |   |    || |   | |    | |  |  || || |  |                                            
GTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGAgtaagtggccccgactgtgagcatctgtggtagcatggcgtt-gtgggttggaggcgcattgcgtggaggtggaggggtggtaggaggcgagtgagtgagatttgaggacgagactgacaatgcggcgatgatgttgttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211262799|gb|FL340613.1|FL340613
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|50322826|gb|CO517952.1|CO517952
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|74240634|gb|DT648548.1|DT648548
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211433496|gb|FL365024.1|FL365024
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|91871634|gb|EB401591.1|EB401591
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|149016913|gb|EE045640.2|EE045640
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211472678|gb|FL333263.1|FL333263
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211203005|gb|FL329082.1|FL329082
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|76289405|gb|DV028973.1|DV028973
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211006621|gb|FL306644.1|FL306644
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|32863845|gb|CF003527.1|CF003527
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|50330954|gb|CO526080.1|CO526080
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211206052|gb|FL353689.1|FL353689
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|148939233|gb|EC883710.2|EC883710
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|78105778|gb|DV524196.1|DV524196
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|148981160|gb|EE027458.2|EE027458
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|149109196|gb|EE190068.2|EE190068
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211010792|gb|FL361171.1|FL361171
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211300361|gb|FL360513.1|FL360513
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211208262|gb|FL334768.1|FL334768
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211304639|gb|FL363545.1|FL363545
EST:     TGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCA
genomic: TGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGA-GAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCA
EST: gi|71435590|gb|DR816640.1|DR816640
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211028623|gb|FL334155.1|FL334155
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAA
EST: gi|149013504|gb|EE043005.2|EE043005
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|148955497|gb|EC901110.2|EC901110
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211014953|gb|FL306689.1|FL306689
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|78089631|gb|DV518005.1|DV518005
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|148956133|gb|EC901902.2|EC901902
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|71431115|gb|DR812165.1|DR812165
EST:     GTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: GTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211438496|gb|FL357616.1|FL357616
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|149072800|gb|EE161045.2|EE161045
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211428294|gb|FL364991.1|FL364991
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGNGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|8368124|gb|BE051069.1|BE051069
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211180906|gb|FL321566.1|FL321566
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211120589|gb|FL351191.1|FL351191
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|8368125|gb|BE051070.1|BE051070
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|14529495|gb|BI096628.1|BI096628
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|74235251|gb|DT643165.1|DT643165
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|94479796|gb|EB708754.1|EB708754
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|21843167|gb|BQ703763.1|BQ703763
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211460275|gb|FL342097.1|FL342097
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAAGACTTCGCCA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCA
EST: gi|211135313|gb|FL346207.1|FL346207
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|71775134|gb|DR973012.1|DR973012
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|148936738|gb|EC880870.2|EC880870
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211100805|gb|FL317180.1|FL317180
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211540628|gb|FL330696.1|FL330696
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|148951139|gb|EC896813.2|EC896813
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|149012390|gb|EE042577.2|EE042577
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|32851430|gb|CD991111.1|CD991111
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|148986532|gb|EE030288.2|EE030288
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|15632488|gb|BI679581.1|BI679581
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|32849416|gb|CD989097.1|CD989097
EST:     ACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACAACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: ACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211193566|gb|FL348606.1|FL348606
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211520187|gb|FL353423.1|FL353423
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|149084532|gb|EE174000.2|EE174000
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAAAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211365026|gb|FL342947.1|FL342947
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|149087498|gb|EE176896.2|EE176896
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|91051996|gb|EB162414.1|EB162414
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211149395|gb|FL319854.1|FL319854
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211473195|gb|FL352565.1|FL352565
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|149087559|gb|EE176956.2|EE176956
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211081232|gb|FL351733.1|FL351733
EST:     TGGACCGCTCGGAGGCCACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGG
genomic: TGGACCGCTCGGAGGT-ACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGG
EST: gi|148965607|gb|EE016447.2|EE016447
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211453393|gb|FL349652.1|FL349652
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211270541|gb|FL358783.1|FL358783
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|149083486|gb|EE172813.2|EE172813
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|149079900|gb|EE168906.2|EE168906
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|71320399|gb|DR796950.1|DR796950
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|76280928|gb|DV020496.1|DV020496
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|76017377|gb|DT944547.1|DT944547
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|148942026|gb|EC887019.2|EC887019
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211404331|gb|FL336239.1|FL336239
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211327239|gb|FL358380.1|FL358380
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|149040598|gb|EE046839.2|EE046839
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|78089539|gb|DV517913.1|DV517913
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|71435905|gb|DR816955.1|DR816955
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211419413|gb|FL327411.1|FL327411
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211364238|gb|FL313229.1|FL313229
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|148991251|gb|EE032720.2|EE032720
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211465530|gb|FL348798.1|FL348798
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|101387395|gb|EB815713.1|EB815713
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|74245929|gb|DT653843.1|DT653843
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|78119506|gb|DV537890.1|DV537890
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211186002|gb|FL332166.1|FL332166
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211120335|gb|FL321093.1|FL321093
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|71431151|gb|DR812201.1|DR812201
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211154140|gb|FL337876.1|FL337876
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211509654|gb|FL311967.1|FL311967
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGNGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|149014235|gb|EE043793.2|EE043793
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|149077993|gb|EE166729.2|EE166729
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|71315051|gb|DR794152.1|DR794152
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|149044440|gb|EE047560.2|EE047560
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211059094|gb|FL354571.1|FL354571
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211409520|gb|FL337685.1|FL337685
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|76935440|gb|DV174318.1|DV174318
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|76911510|gb|DV164307.1|DV164307
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211330752|gb|FL315511.1|FL315511
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|37426389|gb|CF650946.1|CF650946
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTT
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTT
EST: gi|211286662|gb|FL320833.1|FL320833
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|148951910|gb|EC897686.2|EC897686
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211403934|gb|FL320386.1|FL320386
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTG-AGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211235130|gb|FL337976.1|FL337976
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211541428|gb|FL360296.1|FL360296
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTT-GGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|211540627|gb|FL330695.1|FL330695
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|71449285|gb|DR830335.1|DR830335
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
EST: gi|71757261|gb|DR955198.1|DR955198
EST:     TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGA                         CTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA
genomic: TTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 5 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 45 (downstream exon)
Score: 85

GTCCTGACAGGAGGATCTACCTGCCGGATGGGCTCTTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 940

GTCCTGACAGGAGGATCTACCTGCCGGATGGGCTCTTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 79

GTCCTGACAGGAGGATCTACCTGCCGGATGGGCTCTTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 674

GTCCTGACAGGAGGATCTACCTGCCGGATGGGCTCTTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 63

GTCCTGACAGGAGGATCTACCTGCCGGATGGGCTCTTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcaca ... caactggcagCTATGGCTACGACCCTTTTGGCCTGGGCAAGAAGCCAGAGGACTTCGCCAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCTGACAGGAGGATCTACCTGCCGGATGGGCTCTTGGACCGCTCGGAGGTACCGGAGTACCTCACCGGAGAGGTCCCTGGAGAgtaagtcacatcactccaactttgccttccataaaggtttttgcttgtttcagaaattctagattccagttggtagtttaatgaaatcaggttagcgcta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA