1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCACTGCGGTTGACAGCGGGAAGAGGGCGCTGGAGATACTGGGCTCGgtacctgctgctcttctcagttctcactgacgaataggaaaaagacattattggattttcgtttggatgaacctgaactttgccttttctcttgtgtatccag
species | Zea mays |
transcript | GRMZM2G148056_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCACTGCGGTTGACAGCGGGAAGAGGGCGCTGGAGATACTGGGCTCG GAGCCGAATGTGAGCATGATCATCACAGACTACTGGATGCCAGAGATGACCEST: gi|148935412|gb|EC879456.2|EC879456
genomic: TCACTGCGGTTGACAGCGGGAAGAGGGCGCTGGAGATACTGGGCTCGgtacctgctg ... gtgtatccagGAGCCGAATGTGAGCATGATCATCACAGACTACTGGATGCCAGAGATGACC
EST: TCACTGCGGTTGACAGCGGGAAGAGGGCGCTGGAGATACTGGGGCTCG GAGCCGAATGTGAGCATGATCATCACAGACTACTGGATGCCAGAGATGACEST: gi|148961641|gb|EE012410.2|EE012410
genomic: TCACTGCGGTTGACAGCGGGAAGAGGGCGCTGGAGATACT-GGGCTCGgtacctgctg ... gtgtatccagGAGCCGAATGTGAGCATGATCATCACAGACTACTGGATGCCAGAGATGAC
EST: TCACTGCGGTTGACAGCGGGAAGAGGGCGCTGGAGATACTGGGCTCG GAGCCGAATGTGAGCATGATCATCACAGACTACTGGATGCCAGAGATGACC
genomic: TCACTGCGGTTGACAGCGGGAAGAGGGCGCTGGAGATACTGGGCTCGgtacctgctg ... gtgtatccagGAGCCGAATGTGAGCATGATCATCACAGACTACTGGATGCCAGAGATGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACTGCGGTTGACAGCGGGAAGAGGGCGCTGGAGATACTGGGCTCGgtacctgctgctcttctcagttctcactgacgaataggaaaaagacattattggattttcgtttggatgaacctgaactttgccttttctcttgtgtatccag
- - - - - - - - - GGAAGA
- - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - GGAGAT