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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTCATAGTGAGAAAATGAAGCTTCTCCGAGACGAGAAGAATAGAGGGTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATGgtaagttattcaaactccacggttgttgctgcacataaatctagttttttcatgggccatctatggtagagagctgctagtgatgaaaaatcttgtcaag...

Basic information

species Zea mays
transcript GRMZM2G147882_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147882_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g09300.2 (Oryza sativa), 5'ss of exon 2
CTTCCTCATAGTGAGAAAATGAAGCTTCTCCGAGACGAGAAGAATAGAGGGTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATGgtaa-gttattcaaactccacggttgttgctgcacat--aaatctagttttttcatgggccatctatggtagagagctgctagtgatgaaaaatcttgtcaag
|||||    | |||||||||| |||||||||| || ||||||||| |||| || ||||||||||||||||| ||||||||||| ||||||||||| ||||||||   |||| ||   |  |   ||||| |    ||  ||||    | |  | |||  |   | ||  |   |   |     | || |  || ||  | || 
CTTCCCATCAATGAGAAAATGGAGCTTCTCCGGGATGAGAAGAATCGAGGCTATACACCCATGCTAGATGAGATTCTTGATCCAGAAAATCAAGTGAATGgtaataatatttaactcctgcatgtgttgtttattattaaaattgcatgtcatgatgtactgac-atactcttggttttgagattattagcaagct-attaa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211501569|gb|FL375241.1|FL375241
EST:     GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTGAATG                         GTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
genomic: GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATGgtaagttatt ... tctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
EST: gi|71437198|gb|DR818248.1|DR818248
EST:     GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATG                         GTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
genomic: GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATGgtaagttatt ... tctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
EST: gi|76287315|gb|DV026883.1|DV026883
EST:     GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATG                         GTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
genomic: GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATGgtaagttatt ... tctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
EST: gi|88756322|gb|DY540463.1|DY540463
EST:     GTACACACCCATGCTAGATGATATTCTTGATCCTGAGAATCAAGTTAATG                         GTGACTACAAGGAAGGATATTATATTGCAGTTGAGGTACCTGCTGATGATC
genomic: GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATGgtaagttatt ... tctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
EST: gi|74241070|gb|DT648984.1|DT648984
EST:     ACACACCCATGCTAGATGAAATTCCTTGATCCCTGAAAATCAAGTTAATG                         GTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
genomic: ACACACCCATGCTAGATGAAATTC-TTGATCC-TGAAAATCAAGTTAATGgtaagttatt ... tctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
EST: gi|71299023|gb|DR785502.1|DR785502
EST:     GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATG                         GTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
genomic: GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATGgtaagttatt ... tctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
EST: gi|88756286|gb|DY540427.1|DY540427
EST:     GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATG                         GTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
genomic: GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATGgtaagttatt ... tctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
EST: gi|78117759|gb|DV536146.1|DV536146
EST:     GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATG                         GTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
genomic: GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATGgtaagttatt ... tctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
EST: gi|33466889|gb|CF243938.1|CF243938
EST:     GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATG                         GTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGC
genomic: GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATGgtaagttatt ... tctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGC
EST: gi|50323931|gb|CO519057.1|CO519057
EST:     GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATG                         GTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
genomic: GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATGgtaagttatt ... tctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
EST: gi|71429426|gb|DR810476.1|DR810476
EST:     GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATG                         GTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
genomic: GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATGgtaagttatt ... tctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
EST: gi|78078284|gb|DV506699.1|DV506699
EST:     GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATG                         GTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
genomic: GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATGgtaagttatt ... tctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
EST: gi|211382338|gb|FL400551.1|FL400551
EST:     GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTGAATG                         GTGACTACAAGGAAGGATATTATATCGGAGTTGAGGTACCTGCA
genomic: GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATGgtaagttatt ... tctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCA