ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataatttgctcctgacgttcctcacccgtcgtcccattcgattgattgtgcagctgcgtcactggcggtcattggttcatgcgagaatcatgtaa...

Basic information

species	Zea mays
transcript	GRMZM2G147791_T03
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G147791_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g28750.1 (Oryza sativa), 5'ss of exon 1

GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataatttgctcctgacgttcctcacccgtcgtcccattcgattgattgtgcagctgcgtcactggcggtcattggttcatgcgagaatcatgtaa-----
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||  |    |||||||||  | |  |||   |    ||  || |   |     ||||     ||  |     | | | | ||| ||| | ||| ||||       
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGCATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtgcgtctctttgctccttccctctctc--tcactctcagatccagattccc-tgcaatcctgtagcc--ttgccttggtttcttgcaaaaatgatgttttcttc

upper sequence: GRMZM2G147791_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g19840.1 (Oryza sativa), 5'ss of exon 2

GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataatttgctcctgacgttcctcacccgtcgtcccattcgattgattgtgcagct--gcgtcactggcggtcattggttcatgcgagaatcatgtaa
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||  |||   | ||      |     ||   |||      |   || ||    |||   | ||| |     |||  | ||  || |  | |||||||  
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaatccacgccctcttctagcttccgcgcgtgtgcgccatctgctttgatagcccagagtcgccaaaagtctctagtagattcatgtatcatgt--

upper sequence: GRMZM2G147791_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA09G04280.1 (Glycine max), 5'ss of exon 2

GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataatttgctcctgacgttcctcacccgtcgtcccattcgattgattgtgcag---ctgcgtcactg----gcggtcattggttcatgcgagaatcatgtaa-------------------------------------------------------------
    ||||||||||| ||||| || ||||| ||||| | |||||| ||||| |||||||| |||||||||||| | || ||||| || |||||||| ||||||   |   |  |||      |  ||| | |    || |  ||  ||   | |   |   ||   | |||      |     ||  || ||    |  | || |||                                                             
---AAAGTCGAAGAATCACACAGCACACAATCAGTCCTACAAGGCCCACAAAAACGGCATCAAGAAACCCAAGAGGCATCGCCACACTTCCACCAAAGGGGTAgtctctctctctctctctctctctctctctctctctctctcttttatgtttttgggttctcttttactctgatacatatgtttatttattttcgggtaatttaattatgctttttttaacaaaataaataaatttatgcgtttgtgttgttggcaattggtgtag

upper sequence: GRMZM2G147791_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA07G37060.1 (Glycine max), 5'ss of exon 2

GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataatttgctcctgacgttcctcacccgtcgtcccattcg-attgattgtgcagctgcgtcactggcggtcattggttcatgcgagaatcatgtaa---------------------------
||| ||||||||||||||||| || ||||||||||| | |||||| |||||||| ||||| || || || ||| | |||||||| || |||||||| ||||||   |  | | ||  |  | |||   | |  ||  |   |    |||    |   |  ||| |  |   |     ||  |  |||  |   |  | | |                           
GGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCCACAAGAATGGCATCAAAAAGCCAAAGAGGCACCGCCACACTTCCACCAAAGGGgtattctcctcttctttt--ctttctctatcgatctacgtttatatattttccgatgaattgcatttcatacccgtttttttaaatgtaatttttgttttaatgatttgttgttggcaattcatatag

upper sequence: GRMZM2G147791_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA17G03550.2 (Glycine max), 5'ss of exon 2

GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataatttgctcctgacgttcctcacccgtcgtcccattcgattgattgtgcagctgcgtcactggcggtcattggttcatgcgagaatcatgtaa
||| ||||||||||||||||| || ||||||||||| | |||||| || ||||| ||||| || || || ||| | || ||||| || |||||||| ||||||   || | | ||| |    ||  |      |  ||| ||  |||| ||| | ||  | | ||  |     |  || |||     |  | |  |||| 
GGCAAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCCATAAGAATGGCATCAAAAAGCCAAAGAGGCATCGCCACACTTCCACCAAAGGGgtattctactcttctcttatttttattt--ttattttccgat--gattcatttttcatatccctcgtttatttttttttgttg----gcaatttttgtag

upper sequence: GRMZM2G147791_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA09G04280.2 (Glycine max), 5'ss of exon 1

GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataatttgctcctgacgttcctcacccgtcgtcccattcgattgattgtgcag---ctgcgtcactg----gcggtcattggttcatgcgagaatcatgtaa-------------------------------------------------------------
||| ||||||||||| ||||| || ||||| ||||| | |||||| ||||| |||||||| |||||||||||| | || ||||| || |||||||| ||||||   |   |  |||      |  ||| | |    || |  ||  ||   | |   |   ||   | |||      |     ||  || ||    |  | || |||                                                             
GGCAAAGTCGAAGAATCACACAGCACACAATCAGTCCTACAAGGCCCACAAAAACGGCATCAAGAAACCCAAGAGGCATCGCCACACTTCCACCAAAGGGgtagtctctctctctctctctctctctctctctctctctctctcttttatgtttttgggttctcttttactctgatacatatgtttatttattttcgggtaatttaattatgctttttttaacaaaataaataaatttatgcgtttgtgttgttggcaattggtgtag

upper sequence: GRMZM2G147791_T03 (Zea mays), 5'ss of exon 2
lower sequence: AT3G06700.3 (Arabidopsis thaliana), 5'ss of exon 2

GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataatttgctcctgacgttcctcacccgtcgtcccattcgattgattgtgcagctgcgtcactggcggtcattg-gttcatgcgagaatcatgtaa---
||||||||||||||| ||||||||||| |||||||||   || || ||||||||||| || ||||| || | | | ||||| || ||| | ||||  || ||||| |   ||  | | |   |  |  | | |   ||  |||||  | || |||  |  |  |       | | |||| ||| ||| || ||| ||||     
GGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCGGCGAAAGCCCACAAGAACGGAATCAAGAAGCCAAGGAGACACCGTCACACCCCAACCAGAGGAgtaag-tctcttattacagttctaacctaactgatttcagattcgggttatagtgttggaggttt------gattattgcgtttatgtga-aatgatgtttcag

upper sequence: GRMZM2G147791_T03 (Zea mays), 5'ss of exon 2
lower sequence: AT3G06680.3 (Arabidopsis thaliana), 5'ss of exon 2

GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataatttgctcctgacgttcctcacccgtcgtcccattcga---ttgattgtgcagct--gcgtcactggcggtcattggttcatgcgagaatcatgtaa------------------------------------
||| || |||||||| |||||||||||||| |||||   ||||||||| |||||||| || ||||| || | | | ||||| || ||  | ||||  || ||||||   | || |    || ||    |||  |   |   | |      ||||  | ||  |    |  |    |  |  |  | |   |     | | |  ||                                    
GGCGAAATCGAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGAACGGAATCAAGAAGCCAAGGAGACACCGTCACACACCAACCAGAGGAgtaagagtctctgtt----acattttaaacctataaacgattacagattctgatgttacattttaaagctataaacaattttcagattcggatgttaccttccaagtttgatatttaatctatttttgtgaaatgttgcag

upper sequence: GRMZM2G147791_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv05s0077g01220.t01 (Vitis vinifera), 5'ss of exon 1

GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataatttgctcctgacgttcctcacccgtcgtcccattcgattgattgtgcagctgcgtcactggcggtcattggttcatgcgagaatcatgtaa
||| ||||||||||||||||| || |||||||| |||| |||||| |||||||||||||| ||||| |||      ||||||||  | |||||||| |||||||  |   |      |||  | |      |  |      |||    || | ||    ||   |  ||    |  |   || |     |||      | 
GGCGAAGTCGAAGAACCACACAGCTCACAACCAATCGTACAAGGCCCACAAGAACGGCATCAAGAAGCCCCGCAAACACCGCCACGCTTCCACCAAAGGGgtaa--tttctcaactttgatttactcttttccccccttttttctgaagaatatgtgattgatgcgatga-atttgtgttttgaaatctgaaatgaacag

upper sequence: GRMZM2G147791_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv07s0005g01340.t01 (Vitis vinifera), 5'ss of exon 2

GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataatttgct--cctgacgttcctcacccgtc-gtcccattcgattga-ttgtgcagctgcgtcactggcggtcattggttcatgcgaga-atcatgtaa------------------------
||| ||||||||||||||||| || ||||||||||| | ||| || |||||||| || || |||||||||      |||||||| ||||||||||| |||||  |||   |  ||    | |  |    ||  |||  ||    |||  || | || ||      | |   ||| | |   |||||   | |  |     | | |                        
GGCGAAGTCGAAGAACCACACTGCCCACAACCAGTCCTACAAAGCCCACAAGAATGGAATCAAGAAACCCCGAAAGCACCGCCACACCTCCACCAAAGGGgtttgatttctctctgttttaatctcttccaatcgtttgtttttttccttttacttttgtgatctccttggtgg-gttttctggtttgagtgctatggtgtttgatttcttttatttgcattggcgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211538564|gb|FL475998.1|FL475998

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|32863139|gb|CF002821.1|CF002821

EST:     AGAACGGCATTAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|84977600|gb|DW476022.1|DW476022

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211383531|gb|FL339773.1|FL339773

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211150846|gb|FL322005.1|FL322005

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCG-CAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|27575975|gb|CA998669.1|CA998669

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211325274|gb|FL366946.1|FL366946

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|60344497|gb|DN211470.1|DN211470

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|29945293|gb|CB815567.1|CB815567

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211492233|gb|FL339929.1|FL339929

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211507613|gb|FL326176.1|FL326176

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211388269|gb|FL318322.1|FL318322

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|29543949|gb|CB604329.1|CB604329

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211509475|gb|FK960940.1|FK960940

EST:     AGAACGGCATTAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211511850|gb|FK960960.1|FK960960

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211052328|gb|FL436712.1|FL436712

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211475719|gb|FL353041.1|FL353041

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211537098|gb|FL312469.1|FL312469

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|29945295|gb|CB815568.1|CB815568

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|29131024|gb|CB381728.1|CB381728

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTTTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211339946|gb|FL330963.1|FL330963

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCG-CAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211475718|gb|FL353040.1|FL353040

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|32911744|gb|CF016556.1|CF016556

EST:     AGAACGGCATTAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211347546|gb|FL350552.1|FL350552

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211030698|gb|FL437892.1|FL437892

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|32911745|gb|CF016557.1|CF016557

EST:     AGAACGGCATTAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|113702843|gb|EE680347.1|EE680347

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|31910575|gb|CD651493.1|CD651493

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|15100630|gb|BI396421.1|BI396421

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|15209011|gb|BI430895.1|BI430895

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211532310|gb|FL356752.1|FL356752

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         G
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcag-

EST: gi|211532310|gb|FL356752.1|FL356752

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         G
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcag-

EST: gi|211229189|gb|FL350921.1|FL350921

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCG-CAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211317795|gb|FL309522.1|FL309522

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|32910578|gb|CF015390.1|CF015390

EST:     AGAACGGCATTAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211224670|gb|FL333928.1|FL333928

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGC-AGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|67023290|gb|CO452039.1|CO452039

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211093781|gb|FL335572.1|FL335572

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211331437|gb|FL352903.1|FL352903

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|18177881|gb|BM379091.1|BM379091

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211167239|gb|FL005984.1|FL005984

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211540054|gb|FL311055.1|FL311055

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|9953788|gb|BE640371.1|BE640371

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTTTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|14717610|gb|BI245260.1|BI245260

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|15590225|gb|BI674841.1|BI674841

EST:     AG-ACGGCATTAAGAAACCCAAGCGCCACCG-CAGACCT-CACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|26456616|gb|CA828199.1|CA828199

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211088867|gb|FL336458.1|FL336458

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211193511|gb|FL345909.1|FL345909

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCG-CAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|32856298|gb|CD995979.1|CD995979

EST:     AGAACGGCATTAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|14883725|gb|BI273515.1|BI273515

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

EST: gi|211489049|gb|FL326657.1|FL326657

EST:     AGAACGGCATTAAGAAACCCAAGCGCCACCG-CAGACCTCCACCAAGGGG                         ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA
genomic: AGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 27

GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCTAGGAAGGGCAACAAAAAGAGTGGTGAGGCTGAAGCTGAGGAGTAGGAAGGAAAGCATGGCTTTG

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 39

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 24

Block sizes: 49 (upstream exon), 38 (downstream exon)
Score: 4

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataatttgctcctgacgttcctcacccgtcgtcccattcgattgattgtgcagctgcgtcactggcggtcattggttcatgcgagaatcatgtaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA