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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTGGATTTGATGTGGTGCCCCGCGTGTGTTGCAGCAATTGGATTCAACGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTGgtgagttacttggatctcgccgccctcttttgcattcctattgatgagtgataatgggctgttgagcgatcagaagtgcaatttcgtcccaaaacgtaga...

Basic information

species Zea mays
transcript GRMZM2G147726_T05
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147726_T05 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g15040.2 (Oryza sativa), 5'ss of exon 3
TTGTTGGATTTGATGTGGTGCCCCGCGTGTGTTGCAGCAATTGGATTCAACGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTGgtgagttacttggatctcgccgccctcttttgcattcctattgatgagtgataatgggctgttgagcgatc-agaagtgcaattt-cgtcccaaaacgtaga-------
                                     | ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||      |  | | |    ||||  | ||     | || |   | | | |   | |     | ||  | |||| |||||| || |   |  | |          
-------------------------------------CGATTGGGTTCAACGTGGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCGgtgagt------gtgcccccaagtctctgattcacgaggactggt---ttagatttttccgcgagacaatttataagtacaatttacgacaatatccatgaggccaatt

upper sequence: GRMZM2G147726_T05 (Zea mays), 5'ss of exon 2
lower sequence: AT2G24765.1 (Arabidopsis thaliana), 5'ss of exon 3
TTGTTGGATTTGATGTGGTGCCCCGCGTGTGTTGCAGCAATTGGATTCAACGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTGgtgagttactt--ggatctcgccgccctcttttgcattcctatt--gatgagtgataatgggctgttgagcgatcagaagtgcaatttcgtcccaaaacgtaga-
                                     | |||||||| ||||||||||| |||||||||||||| |||||||| || || |||||| | |||  |||      | || |   ||  | | ||    ||   |||   |  |||   ||||   | | |    ||  | |  | |  ||||     |||  || | 
-------------------------------------CTATTGGATTTAACGTTGAGACTGTGCAGTACAACAATATCAAGTTTCAGGTCTGGGATTTAGgtatgttttcgaagaatgtgttcgaacgcattaaactttgaatttgaagtagtagaaatgatttttggtattatatggaagggatattcg-----aaatctacaa

upper sequence: GRMZM2G147726_T05 (Zea mays), 5'ss of exon 2
lower sequence: EFJ37645 (Selaginella moellendorffii), 5'ss of exon 3
TTGTTGGATTTGATGTGGTGCCCCGCGTGTGTTGCAGCAATTGGATTCAACGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTGgtgagttacttggatctcgccgccctcttttgcattcctattgatgagtgataatgggctgttgagcgatcagaagtgcaatttcgtcccaaaacgtaga
                                     | || |||||||| || || || || ||||||||||||||||| || |||||||||||  | |||  ||  |||  |  |   |       ||| ||     |||||  |       | | || |    |||||| |                          
-------------------------------------CGATAGGATTCAATGTAGAAACCGTACAGTACAACAACATCAAATTTCAAGTATGGGACTTGGgtacgtgcctttcaattgttctttgctctttccagaatcattga--aacttctctcgact-tctctcgatcatag-------------------------

upper sequence: GRMZM2G147726_T05 (Zea mays), 5'ss of exon 2
lower sequence: EFJ14920 (Selaginella moellendorffii), 5'ss of exon 3
TTGTTGGATTTGATGTGGTGCCCCGCGTGTGTTGCAGCAATTGGATTCAACGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTGgtgagttacttggatctcgccgccctcttttgcattcctattgatgagtgataatgggctgttgag-cgatcagaagtgcaatttcgtcccaaaacgtaga
                                     | || |||||||| || || || || ||||||||||||||||| || |||||||||||  | |||  ||         ||  | |   |  |||||  |       || | ||| | |   || | ||  |||||| |                          
-------------------------------------CGATAGGATTCAATGTAGAAACCGTACAGTACAACAACATCAAATTTCAAGTATGGGACTTGGgtacgt-------gcctttcagttgttctttgctctttccagaatcattgaaactt--ctctcgactcgatcatag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211068726|gb|FL060703.1|FL060703
EST:     CGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTG                         GTGGTCAAACAAGCATCAGGTACCGGCTCTTTATCATGATAGTAAATTCCT
genomic: CGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTGgtgagttact ... ttctcgacagGTGGTCAAACAAGCATCAGGTACCGGCTCTTTATCATGATAGTAAATTCCT
EST: gi|211068734|gb|FL060711.1|FL060711
EST:     CGTTGAGACGGTGCAGTACAACCACATCAAGTTCCAAGTATGGGATCTTG                         GTGGTCAAACNAGCATCAGGTACCGGGCTCTT-ATCATGATAGTAAATTCC
genomic: CGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTGgtgagttact ... ttctcgacagGTGGTCAAACAAGCATCAGGTACCGG-CTCTTTATCATGATAGTAAATTCC