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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTCAAACAAGCATCAGgtaccggctctttatcatgatagtaaattcctgactgtcatttctgaagtaaataatactattgcatttatttaatcaccgatgaaaagcagtgcaatag...

Basic information

species Zea mays
transcript GRMZM2G147726_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211217104|gb|FL383487.1|FL383487
EST:     TACTCTGTGGTCAAACAAGCATCAG                         GCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCTATCATATATGTTGT
genomic: TACTCTGTGGTCAAACAAGCATCAGgtaccggctc ... tgcatttcagGCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCTATCATATATGTTGT
EST: gi|60396369|gb|DN229238.1|DN229238
EST:     GTGGTCAAACAAGCATCAG                         GCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCTATCATATATGTTGT
genomic: GTGGTCAAACAAGCATCAGgtaccggctc ... tgcatttcagGCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCTATCATATATGTTGT
EST: gi|32945768|gb|CF050587.1|CF050587
EST:     GTGGTCAAACAAGCATCAG                         GCCATACTGGCGGTGCTACTTTCCAAACACCCAGG-TNATCATATATGTTG
genomic: GTGGTCAAACAAGCATCAGgtaccggctc ... tgcatttcagGCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCT-ATCATATATGTTG
EST: gi|31611779|gb|CD568401.1|CD568401
EST:     AACAAGCATCAG                         GCCATACTGGCGNG-GCTACTTTCCAAACACCCAGGCTATCATATATGTTG
genomic: AACAAGCATCAGgtaccggctc ... tgcatttcagGCCATACTGGCG-GTGCTACTTTCCAAACACCCAGGCTATCATATATGTTG
EST: gi|6994080|gb|AW453294.1|AW453294
EST:     GTGGTCAAACAAGCATCAG                         GCCATACTGGCGGTGCTACTTTCCAAACACTCAGGCTATCATATATGTTGT
genomic: GTGGTCAAACAAGCATCAGgtaccggctc ... tgcatttcagGCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCTATCATATATGTTGT
EST: gi|71426509|gb|DR807559.1|DR807559
EST:     GTGGTCAAACAAGCATCAG                         GCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCTATCATATATGTTGT
genomic: GTGGTCAAACAAGCATCAGgtaccggctc ... tgcatttcagGCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCTATCATATATGTTGT
EST: gi|211068733|gb|FL060710.1|FL060710
EST:     GTGGTCAAACAAGCATCAG                         GCCATACTGGCGGTGCTACTTTCCAAACACTCAGGCTATCATATATGTTGT
genomic: GTGGTCAAACAAGCATCAGgtaccggctc ... tgcatttcagGCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCTATCATATATGTTGT
EST: gi|211301270|gb|FL181609.1|FL181609
EST:     TACTCTGTGGTCAAACAAGCATCAG                         GCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCTATCATATATGTTGT
genomic: TACTCTGTGGTCAAACAAGCATCAGgtaccggctc ... tgcatttcagGCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCTATCATATATGTTGT
EST: gi|71775316|gb|DR973194.1|DR973194
EST:     GTGGTCAAACAAGCATCAG                         GCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCTATCATATATGTTGT
genomic: GTGGTCAAACAAGCATCAGgtaccggctc ... tgcatttcagGCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCTATCATATATGTTGT
EST: gi|78110076|gb|DV528491.1|DV528491
EST:     GTGGTCAAACAAGCATCAG                         GCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCTATCATATATGTTGT
genomic: GTGGTCAAACAAGCATCAGgtaccggctc ... tgcatttcagGCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCTATCATATATGTTGT
EST: gi|33092385|gb|CF052379.1|CF052379
EST:     GTGGTCAAACAAGCATCAG                         GCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCTATCATATATGTTGT
genomic: GTGGTCAAACAAGCATCAGgtaccggctc ... tgcatttcagGCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCTATCATATATGTTGT