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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAGACAACTCGGAGTGGATGCGGAACGGCGACTACGCCCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccggcggtctctccatccacctattcaatcgatcgaactttcgatgtttcctgtgggctagggtttctgggattccggatctgattgcttctggttgttgagtgggtgcag

Basic information

species Zea mays
transcript GRMZM2G147671_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147671_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g13970.2 (Oryza sativa), 5'ss of exon 2
CATAGACAACTCGGAGTGGATGCGGAACGGCGACTACGCCCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccggcggtctctccatccacctattcaatcgatcgaactttcgatgtttcctgtgggctagggtttctgggattccggatctgattgcttctggttgttgag-tgggtgcag
||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| |||||||| |||||||||||||| || || |||||||||||||| |   ||  ||     |||    |||   || |||       | |||| ||| |   | |   |||||||    ||  ||||||||||| || || |  ||   | |     |||||
CATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtac--gccaccg-----tccg---acccgatcgatccgcgcggccttcgttgtgt---gcgatttagggttct--gggctccggatctgactgttttttttttcgggggcctttgcag

upper sequence: GRMZM2G147671_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S14_318V6.1 (Physcomitrella patens), 5'ss of exon 2
CATAGACAACTCGGAGTGGATGCGGAACGGCGACTACGCCCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccggcggtctctccatccacctattcaatcgatcgaactttcgatgtttcctgtgggctagggtttctgggattccggatctgattgcttctggttgttgagtgggtgcag
||| |||||||| |||||||||||||||||||| ||  | ||  |  |||| || || || || |||||  | ||||| || ||||| || || || |||||  ||   |  ||   |||     |      ||||      ||   ||        ||    |  |   |    |  |  | ||| |  | || |  || |  ||||          
CATGGACAACTCAGAGTGGATGCGGAACGGCGATTATTCACCTACTAGGTTTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaaca-ttgcaggatcctctgataatgacaacaatgatctaaaagctcag------ctacaaggaaacatgatggtaaacctggaac--aatgttaatgataattgat---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211069192|gb|FL190617.1|FL190617
EST:     CCAGGCGCAGGCCGATTGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: CCAGGCGCAGGCCGA-TGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|211071930|gb|FL190632.1|FL190632
EST:     TCCAGGCGCAGGCCGATG-CGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|31353854|gb|CD438211.1|CD438211
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|211069191|gb|FL190616.1|FL190616
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|211071927|gb|FL190629.1|FL190629
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|29947654|gb|CB816768.1|CB816768
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|211069188|gb|FL190613.1|FL190613
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|5343122|gb|AI795532.1|AI795532
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|211066454|gb|FL190609.1|FL190609
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|67041049|gb|CO467304.1|CO467304
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|211047092|gb|FL234544.1|FL234544
EST:     CCAGGCGCAGGCCGATTGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: CCAGGCGCAGGCCGA-TGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|47961624|gb|CN844333.1|CN844333
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|9824997|gb|BE575199.1|BE575199
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|211069187|gb|FL190612.1|FL190612
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|211069189|gb|FL190614.1|FL190614
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|211069197|gb|FL190622.1|FL190622
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|211069199|gb|FL190624.1|FL190624
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|211069196|gb|FL190621.1|FL190621
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|32915709|gb|CF020521.1|CF020521
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|211069190|gb|FL190615.1|FL190615
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|31360558|gb|CD444915.1|CD444915
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|211069198|gb|FL190623.1|FL190623
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|211069194|gb|FL190619.1|FL190619
EST:     TCCAGGCGCAGG-CGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
EST: gi|211069200|gb|FL190625.1|FL190625
EST:     TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAG                         TCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC
genomic: TCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGgtgccaaccg ... gtgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTC