1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCCGTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAATGgtgtttgtgctgcttggaactcattttttcatctcttctgcgcgagactgtccggaagatgtttttttttgtgtgtttctctgtatgctgaattcgtccaattattacttggattgcag
species | Zea mays |
transcript | GRMZM2G147619_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAATG GAGGAAGAATGCGTAGAGGCACCGTCGTACATCCACATTGACAGCAACGCTEST: gi|86466024|gb|DY232397.1|DY232397
genomic: GTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAATGgtgtttgtgc ... tggattgcagGAGGAAGAATGCGTAGAGGCACCGTCGTACATCCACATTGACAGCAACGCT
EST: GTCTTGTTACTGTCTGCTGTTCCACAGTCGAAAAATCAAAAATGCTGATG GAGGAAGAATGCGTAGAGGCACCGTCGTACATCCACATTGACAGCAACGCTEST: gi|91876633|gb|EB406590.1|EB406590
genomic: GTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAATGgtgtttgtgc ... tggattgcagGAGGAAGAATGCGTAGAGGCACCGTCGTACATCCACATTGACAGCAACGCT
EST: GTCTTGTTACTGTCTGCTGTTCCACAGACGACGAATCACGAATGCTAATG GAGGAAGAATGCGTAGAGGCACCGTCGCACATCCACATTGEST: gi|76019186|gb|DT946356.1|DT946356
genomic: GTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAATGgtgtttgtgc ... tggattgcagGAGGAAGAATGCGTAGAGGCACCGTCGTACATCCACATTG
EST: GTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAATG GAGGAAGAATGCGTAGAGGCACCGTCGTACATCCACATTGACAGCAACGCT
genomic: GTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAATGgtgtttgtgc ... tggattgcagGAGGAAGAATGCGTAGAGGCACCGTCGTACATCCACATTGACAGCAACGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAATGgtgtttgtgctgcttggaactcattttttcatctcttctgcgcgagactgtccggaagatgtttttttttgtgtgtttctctgtatgctgaattcgtccaattattacttggattgcag
- - - - - - - - - GCTGTT