1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGCCGCCATCCGTCGCAGAGCGGATCGAGCGCCTCATGAATGAATCCGCCGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttacctcatttcccccgtctctcatcctcgaatcctaccccctttctccgaaaacctagcgtgtactaggcaagaagccccttcggaaaccgcg...
species | Zea mays |
transcript | GRMZM2G147614_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGCCTCCTCCTCCAACCCCGAAGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|211005527|gb|FL375718.1|FL375718
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|93013166|gb|EB638686.1|EB638686
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|22543273|gb|BU093711.1|BU093711
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CTCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGGAATGAGAGCTTTCCTGCATEST: gi|211034641|gb|FL277424.1|FL277424
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCTTEST: gi|32931457|gb|CF036269.1|CF036269
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|211034640|gb|FL277423.1|FL277423
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCTTEST: gi|211037077|gb|FL277427.1|FL277427
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|17921703|gb|BM259354.1|BM259354
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATGCGGTAATGAGAGCTTTCCTGCAEST: gi|32931995|gb|CF036807.1|CF036807
genomic: CTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGAT-CGGTAATGAGAGCTTTCCTGCA
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|60345606|gb|DN212579.1|DN212579
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|32865677|gb|CF005359.1|CF005359
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|211037075|gb|FL277425.1|FL277425
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCTTEST: gi|211322003|gb|FL424973.1|FL424973
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|22543221|gb|BU093659.1|BU093659
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CTCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG ATTATGTAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|40334273|gb|CK368343.1|CK368343
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CTCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|9254486|gb|BE344954.1|BE344954
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CTNCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|116819180|gb|EC862277.1|EC862277
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGACATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCTTEST: gi|211527102|gb|FL390752.1|FL390752
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|26457225|gb|CA828808.1|CA828808
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CTCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|211416221|gb|FL415023.1|FL415023
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|211240386|gb|FL373755.1|FL373755
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCTTEST: gi|71435867|gb|DR816917.1|DR816917
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: GCCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGGAGTGAGAGCTTTCCTGCATEST: gi|211526828|gb|FL377016.1|FL377016
genomic: GCC-TCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|74235860|gb|DT643774.1|DT643774
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|211161653|gb|FL415254.1|FL415254
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCATEST: gi|78544005|gb|DV621503.1|DV621503
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
EST: CTCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAG AGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
genomic: CGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttac ... gttcttacagAGGATGGAAGAAATGGCACATTTATGATCGGTAATGAGAGCTTTCCTGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCCGCCATCCGTCGCAGAGCGGATCGAGCGCCTCATGAATGAATCCGCCGCCTCCTCCTCCAACCCCGACGAGGCCTCCCTGGACCTCTCCTTCTCAGgttagtttacctcatttcccccgtctctcatcctcgaatcctaccccctttctccgaaaacctagcgtgtactaggcaagaagccccttcggaaaccgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC