Sequence
atgc intronic sequence ATGC exonic sequenceCTCGTCTTGTCCTGGAAGATGGTTCAGTGTGGAGGGCCAAGTCTTTTGGCGCATCAGGAACACAAGTCGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaagtcattttggactgagttatgtttttgtctgggtagtggcatgttttgcatgtcttggttggttgtttttttctgcgaggaaaataaagccttgta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G147450_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g47850.3 (Oryza sativa), 5'ss of exon 3
CTCGTCTTGTCCTGGAAGATGGTTCAGTGTGGAGGGCCAAGTCTTTTGGCGCATCAGGAACACAAGTCGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaagtcattttg--gactgagttatgtttttgtctgggtagtggcatgttttgcatgtcttggttggttgtttttttctgcgaggaaaataa--agccttgta--------------------------------------------------------------------
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CTCGGCTCGTTCTTGAGGATGGTTCAGTTTGGAAGGCCAAGTCTTTTGGTGCTTCAGGAACACAAGTTGGTGAAGTGGTATTTAATACATCTTTGACAGGgtaaatcaactaaccgtttgagtgatggcatt---tgtttcctgttgtggttgagatgtgcttattg-----ttcttcctgatagagaaacaactaacctcatcaaatagttgagacgcgcgtactgcttattgacaacaggaaacaactaacctcatcaaatgggctgcag
upper sequence: GRMZM2G147450_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA04G39390.1 (Glycine max), 5'ss of exon 2
CTCGTCTTGTCCTGGAAGATGGTTCAGTGTGGAGGGCCAAGTCTTTTGGCGCATCAGGAACACAAGTCGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaagtcattt-tggactgagttatgtttttgtctgggtagtggcatgttttgcatgtct--tggttggttgtttttttctgc-gaggaaaataaagccttgta--
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CTAGACTTGTGCTTGAAGATGGTTCAATTTGGAGAGCAAAATCGTTTGGTGCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaactatgaatcttgggatgtgtgtttctttttcatggctttgcttgcatgctgaatatgtggctggttttctttgttgtgttgtgtgtgtgattatcag
upper sequence: GRMZM2G147450_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA06G15510.3 (Glycine max), 5'ss of exon 2
CTCGTCTTGTCCTGGAAGATGGTTCAGTGTGGAGGGCCAAGTCTTTTGGCGCATCAGGAACACAAGTCGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaagt-cattttggact----gagttatgtttttgtctgggtagtggc-atgttttgcatgtcttggttggttgtttttttctgcgaggaaaataaagccttgta
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CTAGACTTGTGCTTGAAGATGGTTCAATTTGGAAAGCAAAATCGTTTGGTGCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatactatgaatcttgggatgcgtgttctttttttggttttgcttgcatgctaaatgagt-ggttggtt-ttctttgttgtgttgtgtgtgtgattctcag
upper sequence: GRMZM2G147450_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ19894 (Selaginella moellendorffii), 5'ss of exon 2
CTCGTCTTGTCCTGGAAGATGGTTCAGTGTGGAGGGCCAAGTCTTTTGGCGCATCAGGAACACAAGTCGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaagtcattttggactgagttatgtttttgtctgggtagtggcatgttttgcatgtcttggttggttgtttttttctgcgaggaaaataaagccttgta
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CAAGGCTTGTTCTTCAGGATGGATCAGTGTGGAATGGCAAGTCTTTTGGAGCTTCTGGAACGCAAGTCGGAGAAGTTGTTTTCAATACTGCCATGACCGGgtatgtatttctctttccattttggatcacaac----cactttaaagtgttgcatgtccttcccag----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|74245056|gb|DT652970.1|DT652970EST: GCATCAGGAACACAAGTCGGTGAAGTTGTTTTCAACACATCACTGACAGG CTATCAGGAGATTTTGACAGATCCAAGCTATGCTGGTCAATTTGTCCTGAT
genomic: GCATCAGGAACACAAGTCGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaagtcatt ... gtggttgcagCTATCAGGAGATTTTGACAGATCCAAGCTATGCTGGTCAATTTGTCCTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCGTCTTGTCCTGGAAGATGGTTCAGTGTGGAGGGCCAAGTCTTTTGGCGCATCAGGAACACAAGTCGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaagtcattttggactgagttatgtttttgtctgggtagtggcatgttttgcatgtcttggttggttgtttttttctgcgaggaaaataaagccttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataaa