Sequence
atgc intronic sequence ATGC exonic sequenceTATAGGAGTTGCAGTCTGCACGGTTACTGATGTCAGTGTGAATGCAAGAGGTCTAATTGCTGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATACgtgagttttagcatctttaaatgcagatttcttatacgtcacctaaccagtaagattgcttgctacctcctgtttgcaattacctgcaagttcgtcggtg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G147446_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g05830.1 (Oryza sativa), 5'ss of exon 4
TATAGGAGTTGCAGTCTGCACGGTTACTGATGTCAGTGTGAATGCAAGAGGTCTAATTGCTGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATACgtgagttttagcatctttaaatgcagatttc---ttatacgtcacctaaccagtaagattgcttgctacctcctgtttgcaattacctgcaagttcgtcggtg
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TATAGGTGTTGCGGTCTGCACAGTTACTGATGTCAGTGTAAATGCAAAAGGTCTGGCTGCTGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATATgtaagttaaaccaacctatgttgtacttgtatggttatgtcccatttatctgctatgagataatactgccttctattccta--tagctgtcctttggcaacc-
upper sequence: GRMZM2G147446_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g05780.3 (Oryza sativa), 5'ss of exon 4
TATAGGAGTTGCAGTCTGCACGGTTACTGATGTCAGTGTGAATGCAAGAGGTCTAATTGCTGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATACgtgagtt----ttagcatcttt---aaatgcagatttcttatacgtcacctaaccagtaagattgcttgctacctcctgtttgcaattacctgcaagttcgtcggtg
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TATAGGTGTTGCAGTCTGCACAGTTACTGATGTCAGTGTAAATGCAAAAGGTCTGGCTGCTGCTGTTATAGCTGTTTGGAGCACAGCTTTACAACAATATgtaagttaaaatcaccacccttgttgtatggttatgtcttatatatcagctatgagataagattgcattctat-tcctatagctctcctttggcagccatg------
upper sequence: GRMZM2G147446_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA06G15280.2 (Glycine max), 5'ss of exon 4
TATAGGAGTTGCAGTCTGCACGGTTACTGATGTCAGTGTGAATGCAAGAGGTCTAATTGCTGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATACgtgagt----tttagcatctttaaatgcagatttcttatacgtcaccta---accagtaagattgcttgctacctcctgtttgcaattacc--tgcaagttcgtcggtg
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GCTCGGCGTTGCTGTCTGTACAGTCACTGATGTCAGTGTCAATGCAAAGGGTTTCATAGCTGCTGTAATAGCAGTTTGGAGCACAGCCCTGCAACAGTATgtaagtaacatacactatcatcaaatcctgaatctttagttgggagatagaaaccaatcagtttgaattccatgtcaccaaggcagttccagatttaaat---------
upper sequence: GRMZM2G147446_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA04G39590.1 (Glycine max), 5'ss of exon 3
TATAGGAGTTGCAGTCTGCACGGTTACTGATGTCAGTGTGAATGCAAGAGGTCTAATTGCTGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATACgtgagt----tttagcatctttaaatgcagatttcttatacgtcaccta---accagtaagattgcttgctacctcctgtttgcaattacc--tgcaagttcgtcggtg
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GCTCGGTGTTGCTGTCTGTACGGTCACTGATGTCAGTGTCAATGCAAAGGGTTTCATAGCTGCCGTAATAGCAGTCTGGAGCACAGCCCTGCAACAGTATgtaagaaacatacactaacatcaaaccccggatctttagttgggagatagaaaccaatcaatttgagttccatgtcacaaaggcagttccagatttaaat---------
upper sequence: GRMZM2G147446_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 4
TATAGGAGTTGCAGTCTGCACGGTTACTGATGTCAGTGTGAATGCAAGAGGTCTAATTGCTGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATACgtgagttttagcatctttaaatgca-gatttcttatacgtcacctaaccagtaagattgcttgctacctcctgtttgcaattacctgcaagttcgtcggtg-
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CCTTGGTGTTGCAGTCTGTACTGTTACTGATGTGAGTGTCAATGCCAAGGGTTTCATTGCTGCTTTTGTTGCAGTTTGGAGCACAGCTCTGCAGCAGTATgtaagtcatc-cttcaatgaccctatgatcttagatagggatggccacagggcaagttaatcaagatagatgtcttgcc-ttgcttatgatgggctgagtttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78115997|gb|DV534385.1|DV534385EST: GTCTAATTGCTGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATAC TATGTCCATTTTCTCCAACGCAAGTACTCCCTGAACTCATTCAACCTCCTG
genomic: GTCTAATTGCTGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATACgtgagtttta ... ccttctgcagTATGTCCATTTTCTCCAACGCAAGTACTCCCTGAACTCATTCAACCTCCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATAGGAGTTGCAGTCTGCACGGTTACTGATGTCAGTGTGAATGCAAGAGGTCTAATTGCTGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATACgtgagttttagcatctttaaatgcagatttcttatacgtcacctaaccagtaagattgcttgctacctcctgtttgcaattacctgcaagttcgtcggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA