1 5' 3' | 2 5' 3' | 3 5' 3' |
GGTGCGTATAATGAGTGCGGGTTTCGACAAGCAGATATTGGCTCAGAAGCTTTCGAAGCTTAATAGCTCACAGCAGACCATAGAGAgtatccttcttgccagtttctcaatccccattaacttaatacttttttttgtctgcgtgaagtattttttatattaacttctcatatgagtatttttcat...
species | Zea mays |
transcript | GRMZM2G147226_T01 |
intron # | 2 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: ATTGGCTCAGAAGCTTTCGAAGCTTAATAGCTCACAGCAGACCATAGAGA CTTTATCACATTGGTGTGTCTTTCATCATCGTTGCTGCCAACAAGTTGTAGEST: gi|213171842|gb|FM190942.1|FM190942
genomic: ATTGGCTCAGAAGCTTTCGAAGCTTAATAGCTCACAGCAGACCATAGAGAgtatccttct ... caaaaaaaagCTTTATCACATTGGTGTGTCTTTCATCATCGTTGCTGCCAACAAGTTGTAG
EST: ATTGGCTCAGAAGCTTTCGAAGCTTAATAGTTCACAGCAGACCATAGAGA CTTTATCACATTGGTGTGTCTTTCATCATCGTTGCTGCCAACAAGTTGTAG
genomic: ATTGGCTCAGAAGCTTTCGAAGCTTAATAGCTCACAGCAGACCATAGAGAgtatccttct ... caaaaaaaagCTTTATCACATTGGTGTGTCTTTCATCATCGTTGCTGCCAACAAGTTGTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGCGTATAATGAGTGCGGGTTTCGACAAGCAGATATTGGCTCAGAAGCTTTCGAAGCTTAATAGCTCACAGCAGACCATAGAGAgtatccttcttgccagtttctcaatccccattaacttaatacttttttttgtctgcgtgaagtattttttatattaacttctcatatgagtatttttcat
- - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA