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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTATGGGTTTGGCATTCTCCTGTTGGAACTGATTACTGGTCCTAAAACCTTGAGCAATGGACATGGCCAGTCTCAGAAAGGCATGATTCTAGACTGGgtaagcttctgtgcacttatttacgtactgtttactgtatttcagccccacgctggagagatttaacacctgctttcgttcctattcag

Basic information

species Zea mays
transcript GRMZM2G146794_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146794_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g14120.1 (Oryza sativa), 5'ss of exon 10
TGTTTATGGGTTTGGCATTCTCCTGTTGGAACTGATTACTGGTCCTAAAACCTTGAGCAATGGACATGGCCAGTCTCAGAAAGGCATGATTCTAGACTGGgtaa---gcttctgtgca---cttatttacgtac-tgtttactgt-atttcagccccacg---ctggagagatt--taacacctgctttcgttcctattcag
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TGTTTATGGGTTTGGTATTCTCTTGTTGGAACTGATCACTGGGCCTAAAACCTTGAGCAATGGGCACGCGCAATCTCAGAAGGGAATGATTCTAGATTGGgtatctccttttagttcaatctttatctaattacctaactactgtcatttgatgcccatatccttgtatactttcttaccacctaatcttaattctctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91875937|gb|EB405894.1|EB405894
EST:     CCTTGAGCAATGGACATGGCCAGTCTCAGAAAGGCATGATTCTAGACTGG                         GTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCG
genomic: CCTTGAGCAATGGACATGGCCAGTCTCAGAAAGGCATGATTCTAGACTGGgtaagcttct ... tcctattcagGTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCG
EST: gi|211309930|gb|FL436459.1|FL436459
EST:     CCTTGAGCAATGGACATGGCCAGTCTCAGAAAGGCATGATTCTAGACTGG                         GTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCGACAGGGAT
genomic: CCTTGAGCAATGGACATGGCCAGTCTCAGAAAGGCATGATTCTAGACTGGgtaagcttct ... tcctattcagGTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCGACAGGGAT