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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTCGACGCTGCGGACTACGCCAGGCCGCCGCTGCCTGCAGGCGGAGGCGGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgaggaacgaaaccagcactccggattcagatgcatgcgcatgcgtggcttccgccgctccccggctgtcttgtctgagccttcctttccgtggggttttcttcttctcttgttgcgttctgtcgccgcttcgcag

Basic information

species Zea mays
transcript GRMZM2G146463_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146463_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g26900.1 (Oryza sativa), 5'ss of exon 1
CGCTCGACGCTGCGGACTAC-GCCAGGCCGCCG-CTGCCTGCA--GGCGGAGGCGGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgaggaacgaaaccagcactccggattcagatgcatgcgcatgcgtggcttccgccgct----ccccggctgtcttgtctgagccttcctttccgtggggttttcttct-tctcttgttgcgttctgtcgccgcttcgcag
    || |     || || | ||   | || || | | | |    |  |  | ||  || |||  |||| ||| |||||||||||||| |||||||||||||||||||| | |    |       |  | |   |||        |   | |  | |||  ||  |        ||  |||     ||||| |  ||  |  |||| | |  | | |  ||| || || | || |   |           
----CGGCAGCATGGGCTGCCGCTTCGTCGGCGGCCGGCGGTGGTGATGATGCCGCTCGCCGCAGCCTCCTCGACAACGGGCTCGGGCGGACGCCGCAGATGGGgtgagagggtttgggtttttccttttctttttcctccatgagaagaaggatagctagcgttgaattaattccatctgctcgatctgatcgatctctcgcgtgcgttcatgtccgatctgttttttcttttttcag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211092681|gb|FL286914.1|FL286914
EST:     GGCCGGCGCGTCCTGTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|76930345|gb|DV172346.1|DV172346
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|89250668|gb|DY622454.1|DY622454
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|78113279|gb|DV531671.1|DV531671
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|91054335|gb|EB164753.1|EB164753
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|211092689|gb|FL286922.1|FL286922
EST:     GGCCGGCGCGTCCTGTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|78080808|gb|DV509220.1|DV509220
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|91874599|gb|EB404556.1|EB404556
EST:     GCCGGCGCCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GCCGGCGC-GTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|33467421|gb|CF244470.1|CF244470
EST:     GG-CGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|211095153|gb|FL286926.1|FL286926
EST:     GGCCGGCGCGTCCTGTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|211095154|gb|FL286927.1|FL286927
EST:     GGCCGGCGCGTCCTGTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|71431665|gb|DR812715.1|DR812715
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|78108215|gb|DV526633.1|DV526633
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|149055656|gb|EE156361.2|EE156361
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|101386530|gb|EB815281.1|EB815281
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|71442888|gb|DR823938.1|DR823938
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|78075209|gb|DV503643.1|DV503643
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|71442889|gb|DR823939.1|DR823939
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|71435988|gb|DR817038.1|DR817038
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|78088431|gb|DV516824.1|DV516824
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|29947680|gb|CB816781.1|CB816781
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|211095152|gb|FL286925.1|FL286925
EST:     GGCCGGCGCGTCCTGTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|50330299|gb|CO525425.1|CO525425
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|71428787|gb|DR809837.1|DR809837
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|37424719|gb|CF650092.1|CF650092
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|211092683|gb|FL286916.1|FL286916
EST:     GGCCGGCGCGTCCTGTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|71443418|gb|DR824468.1|DR824468
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|71443280|gb|DR824330.1|DR824330
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|71318127|gb|DR795825.1|DR795825
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|148940241|gb|EC885013.2|EC885013
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|91875282|gb|EB405239.1|EB405239
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|74238712|gb|DT646626.1|DT646626
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|76011884|gb|DT939054.1|DT939054
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|149009677|gb|EE041609.2|EE041609
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|78110547|gb|DV528957.1|DV528957
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|148973153|gb|EE024223.2|EE024223
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|211092685|gb|FL286918.1|FL286918
EST:     GGCCGGCGCGTCCTGTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|149013904|gb|EE043402.2|EE043402
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|89763957|gb|DY690934.1|DY690934
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
EST: gi|50334852|gb|CO529978.1|CO529978
EST:     GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGG                         GTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG
genomic: GGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgagg ... cgcttcgcagGTGGAACAGCTGGAACCATTTCCAGTGCGACATCAACGAGGCGGTCGTCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCTCGACGCTGCGGACTACGCCAGGCCGCCGCTGCCTGCAGGCGGAGGCGGCCGGCGCGTCCTCTTCGCCAACGGGCTCGGGCTGACGCCGCAGATGGGgtgagtgaggaacgaaaccagcactccggattcagatgcatgcgcatgcgtggcttccgccgctccccggctgtcttgtctgagccttcctttccgtggggttttcttcttctcttgttgcgttctgtcgccgcttcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG