Sequence
atgc intronic sequence ATGC exonic sequenceAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCCGAGGTGCCCTCTGAAGACGTCGTCGgtgagtcgtctcacttctcatggcatcatctctccccgcgtttgcagttgcgggcctgtgtcggttgtggtttggtttttgactagaccgatctatgtgctgatctcttggttggctggaactcggggaggtgagcagaggtggtggtgagtccgcctttcgtttttctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G146206_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g62420.4 (Oryza sativa), 5'ss of exon 1
------------------------AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCCGAGGTGCCCTCTGAAGACGTCGTCGgtgagtcgtc--tcacttctcatggcatcatctctccccgcgtttgcagttgcgggcctgtgtcggttgtggtttggtttttgactagaccgatctatgtgctgatctcttggttggctggaactcggggaggtgagcagaggtggtggtgagtccgcctttcgtttttctgcag
|| || || || |||||||||||||||||||||||||| |||||| | |||||||||||||| || ||||||||||||||| |||| | || | | ||| | | | | | | || | || ||| | | || | | || | || ||| | | || | || |||| || |
GCGCTGCGCTGTTGCTGCGTGCAGAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCCGAGGTGCCCTCCGAGGACGTCGTCGgtgagccgtcgtcccctcccgagggcgttgtttggagttggat---cgatt-----catgaatcgatctggtgctgatctgtgggtttgtttatttattt--taatttttt--ttgggtgcag----------------------------------------------------
upper sequence: GRMZM2G146206_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g62420.2 (Oryza sativa), 5'ss of exon 2
AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCCGAGGTGCCCTCTGAAGACGTCGTCGgtgagtcgtc--tcacttctcatggcatcatctctccccgcgtttgcagttgcgggcctgtgtcggttgtggtttggtttttgactagaccgatctatgtgctgatctcttggttggctggaactcggggaggtgagcagaggtggtggtgagtccgcctttcgtttttctgcag
|| || || || |||||||||||||||||||||||||| |||||| | |||||||||||||| || ||||||||||||||| |||| | || | | ||| | | | | | | || | || ||| | | || | | || | || ||| | | || | || |||| || |
AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCCGAGGTGCCCTCCGAGGACGTCGTCGgtgagccgtcgtcccctcccgagggcgttgtttggagttggat---cgatt-----catgaatcgatctggtgctgatctgtgggtttgtttatttattt--taatttttt--ttgggtgcag----------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211376603|gb|FL163143.1|FL163143EST: GATCGTCACCGTGCTCAACCAAGCCGAGGTGCCCTCTGAAGACGTCGTCG CAGGTCAAGGGGCTGCTGCGGCTGGACTTCGCCGTCGCAGCGCAGAACTGC
genomic: GATCGTCACCGTGCTCAACCAAGCCGAGGTGCCCTCTGAAGACGTCGTCGgtgagtcgtc ... ttttctgcagCAGGTCAAGGGGCTGCTGCGGCTGGACTTCGCCGTCGCAGCGCAGAACTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCCGAGGTGCCCTCTGAAGACGTCGTCGgtgagtcgtctcacttctcatggcatcatctctccccgcgtttgcagttgcgggcctgtgtcggttgtggtttggtttttgactagaccgatctatgtgctgatctcttggttggctggaactcggggaggtgagcagaggtggtggtgagtccgcctttcgtttttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA