Sequence
atgc intronic sequence ATGC exonic sequenceAGATGGTGTTATATGGTCTTATCTTCACAGAGAGAACCCTGAAGGCTGTTCTATATGCCCCTTCTGTCTTGTTCTTCCTTTCCTCGTCAAGCTTCAGCAGgtttttcccaccctatgttatttggaatgacagcagcagcagcaacaacaaaaacctgttcattatttttgacacttttttttgaaaaaactgatatgtcttcttgtactgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G146041_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g15890.3 (Oryza sativa), 5'ss of exon 3
AGATGGTGTTATATGGTCTTATCTTCACAGAGAGAACCCTGAAGGCTGTTCTATATGCCCCTTCTGTCTTGTTCTTCCTTTCCTCGTCAAGCTTCAGCAGgtttttcccaccctatgttatttggaatgacagcagcagcagcaacaacaaaaacctgttcattatttttgacacttttttttgaaaaaactgatatgtcttcttgtactgtag
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ACATGGCATTATCTGGTCTTATCTTCACAGAGACAATCCAGAGGGTTGTTCTCTGTGCCCCTTCTGTCTTGTTCTTCCTTGCCTTGGGAAGCTTCAGCAGgttatttc------atatt-cttaaaatattt-------tggaaagatttatgtttttttaataattccc--cactaattttccatagatcag---------------------
upper sequence: GRMZM2G146041_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g15890.1 (Oryza sativa), 5'ss of exon 3
AGATGGTGTTATATGGTCTTATCTTCACAGAGAGAACCCTGAAGGCTGTTCTATATGCCCCTTCTGTCTTGTTCTTCCTTTCCTCGTCAAGCTTCAGCAGgtt-tttcccaccct--atgttatttggaatgacagcagcagcagcaacaacaaaaacctgttcattatttttgacacttttttttgaaaaaactgatatgtcttcttgtactgtag
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ACATGGCATTATCTGGTCTTATCTTCACAGAGACAATCCAGAGGGTTGTTCTCTGTGCCCCTTCTGTCTTGTTCTTCCTTGCCTTGGGAAGCTTCAGCAGgttatttcatattcttaaaatattttggaaagatttatgtttttttaataattc---cccactaattttccatag------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|91875454|gb|EB405411.1|EB405411EST: CTATATGCCCCTTCTGTCTTGTTCTTCCTTTCCTCGTCAAGCTTCAGCAG ATTAGCAACCATCTGGAGCTGATAAAACCTAATCCAAAGGATGAGCTTGAA
genomic: CTATATGCCCCTTCTGTCTTGTTCTTCCTTTCCTCGTCAAGCTTCAGCAGgtttttccca ... tgtactgtagATTAGCAACCATCTGGAGCTGATAAAACCTAATCCAAAGGATGAGCTTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATGGTGTTATATGGTCTTATCTTCACAGAGAGAACCCTGAAGGCTGTTCTATATGCCCCTTCTGTCTTGTTCTTCCTTTCCTCGTCAAGCTTCAGCAGgtttttcccaccctatgttatttggaatgacagcagcagcagcaacaacaaaaacctgttcattatttttgacacttttttttgaaaaaactgatatgtcttcttgtactgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT